Rhopalosiphum maidis (corn leaf aphid): 113553066
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Entry
113553066 CDS
T06065
Name
(RefSeq) general transcription factor IIH subunit 4
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd03022
Basal transcription factors
rmd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
113553066
09124 Replication and repair
03420 Nucleotide excision repair
113553066
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmd03021
]
113553066
03400 DNA repair and recombination proteins [BR:
rmd03400
]
113553066
Transcription machinery [BR:
rmd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
113553066
DNA repair and recombination proteins [BR:
rmd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
113553066
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
Motif
Other DBs
NCBI-GeneID:
113553066
NCBI-ProteinID:
XP_026812001
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All DBs
Position
2:complement(34367420..34369500)
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AA seq
471 aa
AA seq
DB search
MSKEPGTSKEKRKNLRKDDGSKILKVLTLYEYLIKLPEAVQDRLYSHPPTCLTVFRVLPD
IAQQFTLRILFIEQPVPQSVLSSWVPANYSRELDESIEVATNLHIWKLTSVSGGLKGWIL
NSTFKKKLKVALMGGGRSMVANSDVIADPKARDIDFLDSYAYERWECILHYMVGSKHEGI
SSDAVRVLLNAGLMVRDTDDSPVITSTGFQFLLLDMATQVWYFMLRYMETVESRGLDLAQ
CLTFLFQIHLGTLGWDYITDEMSENLQAFLQHLREFGLVYQRKRKAGRFYPTRLVIEMGQ
GNSRTSERMKTKERYIVVETNFRIYAMTDSDLKVALVALFTHMLYRFPNMAAGILTRDSV
RTALRSGITAAQIVRFLTVHTHPQMQECGMPQTVIDQIYLWENERNRLTYTDGVLYSNIN
TPNDYETIKNYAAEIGALVWCDERRRNIVVSTDGHDDVRKFWKKQPKSDPF
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgtccaaggaacctggtactagcaaggaaaaacggaagaatttacgtaaagacgacggt
tctaaaatactgaaagttctaacattatatgaatatctcatcaaacttccagaagccgtt
caagatcggctctacagtcatccgccgacttgtcttacagtgtttagagtattacctgat
atagctcaacagtttactttacgtattttattcatcgaacagccagttccacaatcggtt
ctttcatcttgggtgccggccaattattcccgtgaacttgacgaatctatagaagtagcc
actaatttacatatatggaaattaactagtgtatctggtggcctcaaaggatggattcta
aattctacattcaagaagaaactgaaagtggcacttatgggtggtggccgttctatggta
gccaacagtgatgtgatagctgatccaaaagcaagagatatagactttttagattcatat
gcatatgaacgatgggaatgcatactgcattatatggttggttctaaacatgaaggtata
tcatcagatgcagtcagagtgttattaaatgcaggtcttatggtcagagatacagatgat
agtccagtaattacatcgacaggatttcagtttttactgctggatatggcaactcaagta
tggtactttatgctccgctatatggagacagtagaatcaaggggccttgatcttgctcaa
tgtctgacattcctctttcaaatacatcttggtactttaggatgggattatataactgac
gaaatgtctgaaaaccttcaagcatttttacaacatcttcgagaatttggattagtttac
caaaggaaacgtaaagctggacgcttttaccctactcgattagtaattgaaatgggacaa
ggaaatagtcgtacttcagaacgaatgaaaactaaagaacgttatatagttgttgaaact
aattttcggatttatgctatgactgattctgatctaaaagttgctttagttgcattattt
actcatatgctttacagatttccaaacatggctgctggtatactaacaagagattcagtt
cgaacggcattacgtagtggcattactgctgcacaaatagtaagatttcttactgttcat
acacatccacaaatgcaagaatgtggaatgccacaaactgttattgatcaaatttatttg
tgggaaaatgaaagaaatcgactaacatacacagatggtgttttatatagcaatataaat
acacctaatgattatgaaacaataaaaaattatgctgctgaaattggggcattggtatgg
tgtgatgaaagaagaaggaatattgttgtaagtactgatggacacgatgacgtaagaaag
ttttggaaaaaacaaccaaaatctgatccattttaa
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