Rhopalosiphum maidis (corn leaf aphid): 113559264
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Entry
113559264 CDS
T06065
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
rmd
Rhopalosiphum maidis (corn leaf aphid)
Pathway
rmd04512
ECM-receptor interaction
rmd04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
rmd00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
113559264
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
113559264
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
rmd04147
]
113559264
00536 Glycosaminoglycan binding proteins [BR:
rmd00536
]
113559264
Exosome [BR:
rmd04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
113559264
Glycosaminoglycan binding proteins [BR:
rmd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
113559264
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
113559264
NCBI-ProteinID:
XP_026820727
LinkDB
All DBs
Position
3:complement(44341792..44378722)
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AA seq
1780 aa
AA seq
DB search
MPRPSLLRWRHFALFVYLFTTVSTQWTPTWKDSNQTNLNEPYYGDQEVKRYTGDNRYAIS
NQRGNSTNCTPKCFAEKGSRGPPGSTGAPGPQGIQGYQGLEGLPGPVGDKGDIGPIGIRG
PKGDRGKTGIPGFPGVSGVPGQMGPQGLPGIPGLDGCNGTDGNPGLPGLPGAIGPRGYQG
ITGEKGQKGDAALTPINNKGQKGEPGLDGDRGIPGNPGFQGIQGPVGPPGETGLKGNRGP
SGLKGEKGNMGLGYEGTKGDKGIKGERGPPGQPLPNSSLIATNNGTVGPPGEPGKKGNAG
ENGEPGMKGEPGPMGDPGTPGDVGEKGEKGLIGTPGPRGRDGYHGPAGPIGQKGDRGIDG
LNGLPGRPGLKGEPGLDGAPGAAGLRGPPGQPGGGKGRPGLPGPQGPRGYPGPTGPKGLD
GIDGLPGPPGPKGNIGGQGVPGSVGLEGLQGEKGTKGEPGLTGLPGESGQRGFPGAQGPP
GPRGLVGEKGASIVGPKGYDGIDGRDGEKGLKGERGYQGERGSPGDSPTGIAGLPGVKGA
TGEKGEEGKPGIPGIPGRDGPKGEIGGRCQGCSPGDKGSKGEPGLYGTPGLKGPRGPPGE
RGYPGEPGADGLIGPTGEAGAPGLDGLQGDPGPPGEKGESAMLTYEQILDIKGETGPRGD
PGRDGLRGLDGLPGPKGMPGSDGNPGIVGEKGDRGFPGSDGIPGQTGYPGAKGEKGISIK
GEQGILGRPGIRGDKGEPGLTGPKGTPGKCELSEQERRQKGEPGSRGEKGEPGPPGIDGF
PGEKGSIGPIGPIGPIGPRGIPGLVGPRGQPGIRGEKGNTGPMGFLGEAGRDGERGYPGL
PSPKGAKGEPGVPMVGPKGSEGFPGEKGEKGLQGPFGRPGVSGEPGTPGLPGEKGIQGEA
GLEGLAGQPGPKGEPGPVGPSGPPGNDGIPGADGPKGETGLPGEPGRPGLQGFPGPKGDT
GPTGPEGPKGFSGYRGMPGAVGKPGIDGMPGEKGDKGDIGLPGISGPPGEDGLPGPQGYR
GEKGDIGFPGPPGETGLRGLPGPAGDRGPVGLPGLKGEPGPVSEKGQKGEPGESGLRGPQ
GLPGIDGLPGIKGDMGFPGIGLQGWAGQKGEPGIPAYDGRPGNDGEKGVAGVAGVPGMKG
DTGPRGVPGTPGPPGMDGIDGMKGNTGYPGIPGQEGEKGDVGYPGLPGLDGEKGERGLPG
LIGLTGLKGAMGDKGDRGLPGPAVDIKGDKGEPGPPGFPGIPGAIGPVGPSGPPGIEGEK
GDMGLPGVTGYPGPSGPRGEKGNVGPQGLPGFPGTTIKGEKGLPGLLGKHGRDGLPGLSG
EKGDKGLPGLPGLPGPIGPIGLPGSPGDVGAIGPPGFPGPPGSDGYPGAPGKDGPPGLMG
LKGEPGNPAPYGEKGDKGDVGFAGEPGYPGIKGDKGERGYQGLEGLQGVQGLPGDKGLAG
LPGKIGMPGISGVKGDKGEPGLAPPPGSKGERGLPGPVGWPGEKGDRGIDGLPGLEGLKG
EMGVPGLNGPVGPPGPEGEKGEPGIEGLPGLQGPPGQRGNDGPAGKSCESEPNYSTGILL
VKHSQSSSIPQCEPNHAKLWDGFSLLYIEGNEKSHNQDLGFAGSCIRKFSTMPFLFCDFN
NVCNYASRNDKSYWLSTNAPLPMMPVEENDIQKYISRCVVCEAPTNVIAVHSQASNIPDC
PNGWEGLWIGYSFVMHTAAGAEGGGQSLASPGSCLEDFRATPFIECNGARGTCHYFANTM
SFWMATIEVDEQFTSPKRQTLKKDDSRTRISRCQVCIRST
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgccgcggcccagtctgctccgttggcggcatttcgcattattcgtctatttgtttacg
acagtatcgacgcaatggactcccacttggaaggattcaaatcaaacaaatttaaatgaa
ccatattatggagatcaagaagtaaaacgatacactggtgacaatagatatgccatttca
aaccagagaggcaactcaacaaattgtacaccaaaatgtttcgcggaaaaaggaagccga
ggaccaccgggatcaactggtgctccaggtcctcaaggaatacaaggatatcaaggactt
gaaggtcttccaggtccggtgggtgacaaaggagatattggtccaataggaatacgagga
ccaaaaggagataggggcaaaacgggtattccaggatttccaggtgtaagtggagtacca
ggacaaatgggccctcaaggattgccaggtatacctggtttagacgggtgtaatggaaca
gatggaaatcctggtcttccaggattaccaggagctattggacctcgtgggtaccaagga
ataacaggcgaaaaaggtcaaaaaggagatgctgctctaacaccaataaataacaaaggt
caaaagggagagcctggtttggatggagatcgaggaatacctggaaatcccgggtttcag
ggaatacaagggcctgttggaccaccaggagaaactggattaaaaggaaatcgtggtcct
tcgggcttaaaaggagaaaagggaaatatgggacttgggtatgaaggtactaaaggagac
aaaggtattaaaggagaacgtggaccaccaggacaacctttaccaaactcgtcgttaatt
gcaaccaacaatggaacagttgggcctcctggtgaacctggtaaaaaaggaaatgcgggt
gaaaatggtgagcctggaatgaaaggagaaccaggacctatgggtgatccaggaacacca
ggcgatgttggtgaaaaaggagaaaagggcttaataggaacaccaggaccaagaggtcgt
gatggttatcatggacctgcaggaccaattggacaaaaaggtgatcgaggaattgatggc
ttgaatggattaccaggacgacccgggcttaaaggagaaccaggattggatggagcacca
ggtgcagctgggttgcgaggacctccaggacaaccagggggcggaaaaggcagacccggt
cttcctggacctcaaggaccacgaggatatcctggacctacaggaccaaaaggtttagat
ggcatagacggcctacccggacctcctggtccaaaaggaaatattggaggacaaggagta
ccaggatctgtgggcctagaagggttacaaggtgaaaagggaacaaaaggagagccagga
cttacaggtttgcccggagaatctggtcaaagagggttccctggcgcacaaggcccacct
ggacctagaggacttgttggtgaaaagggtgcttcaattgtcggacctaaaggatacgat
ggaattgatggacgagatggtgaaaagggacttaaaggtgaacgtggttaccagggtgaa
cgaggatctccaggtgattcgccaactggtattgctggacttccaggtgtaaagggtgct
actggagaaaaaggagaagaaggaaaaccaggaattccaggaattccaggtcgagatgga
ccaaaaggtgaaataggtggacgctgccaaggctgtagcccgggagataaaggtagtaaa
ggagaacctggattatacggaactccagggttgaagggaccacgaggaccaccaggagaa
agaggatatccaggtgaacccggtgctgatggactgattggaccaactggcgaagctggt
gctcctggattagatggcctacaaggagatcctggcccacccggtgaaaaaggtgaatct
gcgatgttaacatatgaacaaatactagatataaaaggagaaactggtccacgtggagat
cctggaagagatggattacgaggattggatggactacccggacctaagggaatgccaggt
agtgatggaaaccctggaatagttggagaaaaaggtgatagaggattcccaggttctgat
ggtataccaggacaaacaggataccccggagccaaaggagaaaaaggcattagcattaaa
ggggaacaaggaattctaggaagacctggaataagaggagataaaggagagcctggatta
accggtcctaaaggaactccaggtaaatgtgaacttagtgaacaagagaggcgccaaaaa
ggcgaacctggaagtagaggagaaaagggtgaacctggtccacctggtattgatggtttt
ccgggagaaaaaggatcaataggaccaattggtccaattggaccgataggaccaagagga
attccaggtcttgttggccccagaggacaaccaggtattcgtggagaaaagggaaatact
ggaccaatgggtttccttggtgaagctgggcgtgatggagaaagaggatatccaggatta
ccttcacctaaaggtgccaaaggtgaacccggtgtacctatggttggaccaaagggttca
gaaggatttcctggtgaaaagggcgagaaaggtcttcaagggccgtttggaagaccagga
gtctctggtgaaccgggaactcctggattacctggagaaaaaggaattcaaggtgaagct
ggtttagaaggattagctgggcagccaggacctaagggagaacctggccccgtaggacca
agtggaccacccggtaatgatggcatacccggcgcagatggtccaaaaggtgaaactgga
ttaccaggtgaaccaggtagaccaggtctgcaaggattccctgggccaaaaggtgatact
ggaccgacaggcccggaaggtcctaaaggattttcaggatacagaggaatgccaggagct
gttggaaaacctggaatcgatggaatgccaggagaaaagggtgataaaggagatattgga
ttacctggaatcagtggaccacctggagaagatggtttgccaggaccacaaggatataga
ggtgaaaagggtgatataggattccccggacccccaggtgaaacgggattacgtggtctt
ccaggtcctgcaggcgaccgaggtccagtaggattaccgggattaaaaggagaacctggt
ccagtttcagaaaagggacaaaaaggagagcctggtgaatccggtcttagaggaccacaa
ggactaccaggaattgatggtttacctggaataaaaggagacatgggattccctggtatt
ggattacaaggatgggctggacaaaagggagaacccggtatacctgcatacgacggtaga
cctggaaatgatggtgaaaagggagttgctggagttgctggtgttccaggaatgaaaggt
gacacgggacctcgaggcgtcccaggaacaccaggacctccgggaatggatggtatagat
ggaatgaaaggcaatacaggttatccaggaattcctggacaagaaggtgaaaagggtgac
gttgggtaccccggattaccaggattagatggagaaaaaggagaaagaggcttaccagga
ttaattggattaactgggctaaaaggagctatgggagataaaggtgatcgaggattacca
ggtcctgcagttgatattaaaggagataaaggtgaaccagggccaccaggattcccagga
atacccggtgcaataggtcccgtcggacctagtggaccacctggtattgaaggagaaaag
ggtgacatgggattgccaggtgtaactggttatccaggtccttcaggtccaagaggagaa
aagggtaatgttggacctcaaggattaccaggcttcccaggaacgacaatcaaaggagaa
aagggattgccaggattattgggtaaacatggcagagatggactacctggcttaagtgga
gaaaaaggtgataaaggactaccaggattaccaggattacctggtccaattggaccaatt
gggttgccaggttcaccaggtgatgttggagcaattggaccaccaggtttccctggacct
ccgggatcagatggatatccaggtgcaccaggcaaggatggtccaccaggattaatggga
ttaaaaggagaaccaggaaaccctgcaccgtacggcgaaaaaggagacaagggcgatgtt
ggttttgcaggagaaccaggttatcctggaattaaaggagataagggagaaagaggttat
caaggacttgaaggattacaaggtgtacaaggtttaccaggtgacaaaggattagctgga
ctgccaggaaagataggtatgcctggaatctctggagtcaaaggtgataaaggtgaacct
ggtttagcgcctccgccaggatctaaaggagaacgaggattacctggacctgtcggttgg
ccaggtgaaaagggagaccgtggaattgacggccttcctggtttagaaggattaaaagga
gaaatgggtgttcctggtttgaatggtccagttggtcctccaggtccagaaggcgaaaag
ggtgaaccaggaatagaaggtctcccaggcttacaagggcccccgggtcaacgaggaaac
gatggacctgctggtaaatcttgtgaatcggaaccaaattattcaacgggaatattgttg
gtcaaacatagtcagagttcttcgatacctcagtgtgaaccaaatcacgcaaaactctgg
gacggattcagtttgttatacatagagggcaacgaaaaatcacacaatcaagatttagga
tttgccggttcttgtatccgaaaattctccaccatgccattcttgttctgcgactttaac
aacgtatgcaattacgcaagtagaaacgacaaatcgtattggctcagcaccaatgcacca
ttaccaatgatgccagttgaagaaaacgatattcaaaaatatatttctagatgtgttgta
tgtgaagcacctaccaacgttattgccgtacacagtcaggcgtcaaatattcccgactgc
cccaacggttgggaaggtttgtggattggatacagttttgtaatgcacacggccgcgggc
gcggaaggcggtggtcaatcgttggccagtcctggttcgtgcctggaagatttcagggct
acaccgttcatcgaatgtaacggagcgcgaggaacgtgccattatttcgccaacactatg
agtttctggatggcgaccatcgaagttgatgaacagttcaccagccccaagaggcaaaca
ttgaagaaggacgacagtcgcactcgcatcagcagatgccaagtgtgcatacgatcgact
tag
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integrated database retrieval system
