Roseimaritima multifibrata: FF011L_17620
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Entry
FF011L_17620 CDS
T07409
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rml
Roseimaritima multifibrata
Pathway
rml03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FF011L_17620 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rml03400
]
FF011L_17620 (mfd)
Enzymes [BR:
rml01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FF011L_17620 (mfd)
DNA repair and recombination proteins [BR:
rml03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FF011L_17620 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QDS93007
UniProt:
A0A517MDZ9
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All DBs
Position
complement(2282861..2286115)
Genome browser
AA seq
1084 aa
AA seq
DB search
MNKKASPQQVSLTQLPSLLVKGAGLAAPLKNWKPGTDLWFEGVQDSLRALLATAISGHCP
AVLVLLPQAVDADIVAGDLVAFGATNVCSLPLSANSQAPDSIRDADFAERLQVLQRMRQS
VEGKDKEPLIVTAYVGAAMQKVPSPNAIATATRTLKVGQTLDLEGTRQWLAEAGFHPATA
VDLPGEFCQRGGILDIYSPDQPLPVRIELFDDEIESIRRFDPASQRSTEVLTEIDLAAVG
AAIASPGRLIDFLSPDAAILIVDPERCQQSAATLLHRAGNENHFGDWPELVGSFAGHRVG
LACELAPGDADNLFPLRTSSVDSFIGNLEHVQERIDTVAAGHRVIVVGDTAAEAERLSEL
LRPTQAAQHGRLTVTVASLSSGFRLTAAEVLLLTGAELFHRSPVRRVKTRVRGKPIDSFQ
QLKPSDLVVHLSHGIGLYRGMELIEKGGHGQEHLVIEFAGGTTIYVPAARIGLIQRYVGG
SKTRPRLAKIGGVSWAKNRKSAEAAVHDMASELLEVQAVRSSRVGLVFDVDSHWQHQFDA
IFPYTETPDQLLAIEALKEDMQQPRPMDRLICGDVGYGKTEVAMRAAFKAVDSGFQVAVL
VPTTVLAEQHHHSFVTRMAEFPFDIAKLSRFVPAAEQRDTIKRIRSGNVDIVIGTHRLAS
KDVVFDNLGLVIIDEEQRFGVAVKERLKTRHSNVDVLTLSATPIPRTLHMALVGVRDISN
LETPPEDRMPVETNVGRWDDKVIRDAIVRELNRGGQLYFVHNRISDMEKIANRIRQIVPE
VRIGMGHGQMAEGELEKVMVGFIDRQFDLLLATTIIESGLDISNANTIFVNEADRYGLAD
LHQLRGRVGRYKNQAYCHLLVDRNKFLTPEAAKRLRAIEEFSQMGAGFAISMRDLEIRGA
GNLLGTQQSGHIAAIGYELYCQLLEDAVRQAQNLPPKLSAEVDIDLPVEAYLPPSYVSDM
RHKIDLYRRIARIDGAGQITAIREELHDRFGPLPAPAERMLQLAELRLDAAIWLISSITQ
KQGFLVLNYSDPARMEQLVRQNKGKTPVRIVDKRQAYVPVKDIDTNDPTGVAWLKRARAV
LHLG
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
gtgaacaaaaaagcatccccccagcaggtttcgctgacgcaacttccctcacttttagtg
aaaggggccgggcttgctgcgccgctgaaaaactggaaaccagggaccgacctttggttt
gaaggggtccaagacagtttgcgggctctcttggcaacggccatttccggccattgtcct
gccgtgctggtgcttctgccccaggcggttgatgccgacatcgtcgcgggggacctggta
gcgttcggagcgaccaacgtttgctccctgcctctttccgcgaattcgcaggctcctgac
tccatccgcgacgccgatttcgccgaacgactgcaggtcctccaacggatgcggcagtcc
gttgagggcaaagacaaggaaccgttgatcgtgaccgcctacgtcggcgccgcgatgcaa
aaggtccccagccccaacgcgatcgcgaccgccactcgaaccctaaaagttggccaaacc
ctcgatctggaagggacacgtcaatggctggccgaagccggatttcaccccgccaccgcg
gtcgacctgccgggagaattttgtcagcgtggcgggatcctggacatctactcccccgac
cagcccctgccggtccgcatcgaattatttgacgacgaaatcgaatcgatccgccgcttt
gaccccgctagccagcggagcacggaagttctaacggaaatcgatttggccgctgtcggc
gccgcgatcgccagtcccggccgattgatcgatttcctttcccccgatgccgcgatcctg
atcgtcgaccctgaacgctgccaacagtcagcagccaccctgcttcatcgcgcgggcaac
gaaaatcactttggggactggcccgaactggtcggatccttcgccgggcatcgcgtcggc
ttggcctgcgaactggcccccggcgatgcggacaacctttttccgcttcggaccagttcc
gtcgatagttttatcggcaacctagaacacgtccaagaacggatcgacaccgtcgccgca
ggtcaccgtgtgatcgtggtcggcgataccgcggcggaagccgaacgacttagcgaactg
ctacgtcccacccaagccgcccagcatggtcgactgaccgttacggtggcttctctcagc
agtggctttcgcttaaccgccgccgaagtcctcctgctgaccggcgcggaactgtttcat
cgcagccccgtccgccgcgtcaaaacccgcgtccgcggaaaacccatcgatagcttccag
caactgaagccaagcgatttggtggtccacctgtcacacggtatcggcctctatcgcgga
atggagctgatcgaaaaagggggccacgggcaagaacacctagtgatcgaatttgctggg
gggacgacgatctacgtcccggcggctcggatcggtttaatccagcgatacgtcggcggc
agtaagactcgcccacgcctagcaaaaatcggcggcgtctcttgggcgaagaaccggaaa
tcagccgaagccgccgtccatgacatggcctcggaactgcttgaggtccaagccgtgcgg
tcctcacgtgtcggcctggtctttgacgtcgacagtcactggcaacaccaattcgacgca
atctttccgtacaccgaaacccccgatcaattgctcgcgatcgaagccttaaaagaggac
atgcagcaaccgcggccgatggaccgcctgatttgcggcgacgtcggttacggaaaaacg
gaagtcgcgatgcgggccgctttcaaggcggtcgacagcggattccaagtcgcagtcctt
gtccccaccaccgtgctggcggaacaacatcaccacagctttgtcacgcgaatggcagaa
ttccctttcgacatcgctaaattaagccgcttcgttcccgctgccgaacaacgcgatacg
atcaaacggattcgctcggggaacgtcgatatcgtgatcgggacccatcgcttggcttcc
aaagatgttgtcttcgataacctcggcctggtgattatcgatgaagagcaacgctttggc
gtcgcggtcaaggaacgcttaaaaacacgccacagcaacgtcgatgtcctaacgctctcg
gcaaccccgatcccgcggacgcttcatatggcgctcgtcggcgtccgcgacatcagcaat
ctggaaacgcccccagaagaccggatgccggtggaaaccaatgtcggccgctgggatgac
aaagtgattcgtgacgccatcgtccgcgaactgaaccgcggcggacagctttacttcgtc
cataatcgcatcagcgacatggagaaaatcgcgaatcgaatccgccagatcgtccccgaa
gtccggatcggaatggggcacggacaaatggccgaaggcgaactggaaaaggtaatggtc
ggttttatcgatcgccaatttgatctgctgttggccaccacgatcatcgaaagcggtttg
gacatttccaacgccaatacgattttcgtcaacgaggccgatcgctacggcctagcagac
ctacaccaattgcgagggcgtgtaggacgatataaaaaccaagcctactgccacctgctg
gtcgatcgcaacaaattccttacccctgaagcggcgaaacgactgcgagctatcgaagaa
ttctcgcagatgggagcagggttcgcgatttcgatgcgcgacctagaaatccgcggtgca
gggaaccttctggggactcagcaaagcgggcacatcgccgcgatcggatatgaactttac
tgccagctacttgaggacgctgtccgccaagctcaaaacctgccgccaaaattgtccgcc
gaagtcgacatcgatctgccggtcgaggcgtaccttccgcccagctacgtatcggacatg
cgtcacaagattgacctctatcggcgaatcgcaagaatcgacggcgctggccaaatcacg
gcgatccgtgaagaactgcacgatcgttttgggccgctgcccgctccggcagaacgaatg
ctgcagctggccgaactacgcttggacgcggcgatttggctgatctccagcatcacccaa
aagcaaggcttcctggtcctcaattacagcgatcccgctcgcatggaacaattggtgcgg
cagaacaaaggaaagacgcccgttcgcattgtcgataaacggcaggcctacgtccccgtt
aaggatatcgacaccaacgatccgaccggagttgcgtggttaaaacgagcaagagcggtg
ttgcatttgggataa
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