Roseovarius mucosus: ROSMUCSMR3_00704
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Entry
ROSMUCSMR3_00704 CDS
T04779
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rmm
Roseovarius mucosus
Pathway
rmm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ROSMUCSMR3_00704 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmm03400
]
ROSMUCSMR3_00704 (mfd)
Enzymes [BR:
rmm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ROSMUCSMR3_00704 (mfd)
DNA repair and recombination proteins [BR:
rmm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ROSMUCSMR3_00704 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
MFD_D3
UB2H
AAA_16
RecG_dom3_C
SecA_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ARE82205
UniProt:
A0A1V0RKL5
LinkDB
All DBs
Position
complement(719740..723192)
Genome browser
AA seq
1150 aa
AA seq
DB search
MTKAQHITVGGAPEGFDATLILAEVAKTGAPVLHVARDDKRMAAMQAALRFFAPDMPVIT
FPGWDCLPYDRVSPNAEISATRMATLAGLAHGGPSQFVLLTTLNAATQRVPAREVLRGAA
FVAAVGERIDEKALRDFLVRMGFTQAPTVTEPGDYALRGGIIDIYPPGEGGPVRLDLFGD
VLDGVRGFDPGTQRTTEKLDRVELAPVSEVILDEEAIRRFRQNYRIEFGAAGTDDPLYEA
VSAGRKHAGVEHWLPFFHERLEGLFDYLPQATITLDEQVTPQRLARWESIADQYETRHLA
LSQKSRGDTVYKPVQPGLLYFDDAAWTAAVAERRVLQFAALPQATGPGVIDAGGRIGRNF
APERQQENINLFSALKDHIRAKLDRAPVLVASYSAGARERLEGLLEDEGLIGAVGVSSAK
GIGKHGLHLAVWPLESGFDAPGLTVISEQDVLGERLIRAPRRRRAENFLTEAQSLSVGDL
VVHVDHGIGRYLGLEVVTAAGAAHECLVLEYAESSKLYLPVENIELLSKYGHEEGLLDRL
GGGAWQAKKARLKERIREMADRLIRVAAERALRSAPVIEPEHHAWEAFAARFPYQETDDQ
LHAIEDVLNDLGSGAPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAPTTLLARQH
YQEFASRFRGFPVNVRPLSRFVSAGEAAKTRDAMARGEADIVVGTHALLAKGIRFKNLGL
LIIDEEQRFGVAHKERLKQLRSDVHVLTLTATPIPRTLQLSLSGVRDLSIISTPPVDRLS
IRTYVSEFDSVTVREALLREHYRGGQSFYVVPRISDLPEIEDFLKTQVPEVSYVIAHGQM
AAGELDERMNAFYDGKYDVLLATTIVESGLDIPTANTMIIHRADMFGLSQLYQIRGRVGR
SKTRAYAYLTTKPRLPLTPGAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQSG
QMRDVGYELYQSMLEEAIAKIKSGQMEGLSEADEQWAPQINLGVPVLIPEEYVPDLDVRL
GLYRRLSGLETKVELEGFAAELIDRFGKLPREVNMLMLVVRIKAMCKRAGIAKLDGGPKG
ATIQFHNDKFASPQGLVEFINDERGLAKVRDNKIVVRRDWKGESDRIKGAFGIARDLAEK
VVAEAKRAKG
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaggcgcaacatatcaccgtgggcggcgcgcccgaaggctttgacgcgacgctc
attctggctgaggttgccaagaccggcgcgccggtgctgcatgtggcacgcgatgacaag
cggatggcggcgatgcaggctgcattgcgctttttcgcaccagatatgccggtgattacc
tttccgggctgggattgcctgccctatgatcgcgtgtcgcccaatgccgagatcagcgcc
acgcggatggcgacgctggcggggctggcgcatggggggccgtcgcagttcgttctattg
accacgctcaatgccgcgacacagcgggtgcctgcgcgcgaggtgttgcgcggtgcggcc
tttgtggccgcagtgggcgagcgcattgatgaaaaggcattgcgggattttctggtgcgg
atggggttcacgcaggcacccaccgtcacggagccgggggattatgcgctgcgtggcggc
atcatcgacatctacccgccgggtgagggcggaccggtgcggcttgatctttttggtgat
gtgctggacggggtgcgcgggtttgatccgggcacgcagcgcacgaccgaaaaattggac
cgagtagagctggccccggtctctgaggttattctcgacgaggaagcgatccgccgcttt
cgtcagaattaccggatcgaatttggcgctgcgggcaccgatgatccgctctatgaggcg
gtgagtgccgggcgcaaacatgccggggtcgagcattggttgccattctttcacgagcgg
ctggaggggctttttgactatctgccgcaggcgacgatcacgctggatgagcaggtgacg
ccgcagcggttggcgcgttgggagagtatcgcggatcagtatgagacccggcatctggcg
ctgagccagaaatcgcgcggtgacacggtgtataagccggtgcagccggggctgctctat
ttcgacgatgccgcgtggacggcggcggtggccgaacggcgcgtgttgcaattcgcggcg
ctgccgcaggcgaccgggccgggggtgatcgacgcaggcgggcgcatcgggcgcaatttc
gcaccggagcggcagcaggaaaacatcaacctcttcagtgcgttgaaggatcatattcgc
gcgaaactcgaccgtgcgccggttttggtggcctcctattccgcaggcgcgcgcgagcgg
cttgagggcctcttggaagacgaggggttgattggcgctgtcggggtgagcagcgccaag
ggcattggcaagcatgggctgcatttggcggtttggccgcttgagagcgggtttgacgcg
ccggggctgacggtgatttccgaacaggatgtgctgggcgagcggttgatccgcgcgccg
cgccggcgacgggccgagaatttcctgaccgaggcgcagagcctgagtgttggcgatctg
gtggtgcatgtcgaccacggtatcgggcggtatctggggcttgaggtggtcaccgccgcc
ggggccgcgcatgaatgcctcgtgctggaatatgccgaaagctccaagctgtatctgccg
gtcgagaatatcgagctcttgtcgaaatacggccatgaagagggcctgcttgaccgtctg
ggcggcggcgcgtggcaggccaagaaggcgcggcttaaagagcgtatccgcgagatggcg
gatcgtctgatccgggtggcggccgaacgggcgctgcgcagcgcgccggtgatcgagccg
gaacatcacgcctgggaggcctttgccgcgcggttcccctatcaagagaccgacgatcag
ttgcatgcgatcgaggatgtgttgaacgatctgggatcgggcgcgccgatggatcggttg
atctgtggcgatgtgggttttggcaagaccgaggtggcgatgcgcgcggcctttgttgcc
gcgatgtcggggctacaggtggcggtgattgcgcccaccacattgcttgcgcggcagcat
tatcaggaatttgcgtcacggttccgcggctttccggtcaatgtgcggcccttgtcgcgg
tttgtgtcggcgggagaggcggccaagacccgcgatgccatggcgcgcggcgaggcggat
attgtcgtgggcacccatgccctcttggccaagggcatccggttcaagaaccttgggctc
ttgatcattgacgaggaacagcgctttggcgtggcgcataaggagcggttgaagcagttg
cgttcggatgtgcatgtgctgacgctgaccgcgacgccgattccgcgcacgctgcaactg
tcgctgtcgggggtgcgcgacctgtcgatcatcagcacgccgcccgtcgaccgtttgtcg
atccgcacctatgtgagcgagtttgacagtgtgaccgtgcgcgaggcgctgttgcgcgag
cattatcgcggggggcagtcgttctatgtggtgccgcgcatcagtgatctgcccgagatc
gaggatttcctgaaaacgcaggtgcccgaggtgagctatgtcatcgcccatgggcagatg
gcggcgggggaactcgacgagcggatgaacgcgttttacgacggcaaatacgatgtgctg
ctggcgacgacgattgttgaatctggcctcgatattcccacggccaatacgatgatcatc
caccgcgccgatatgtttggcctgagccagctctatcagatccggggtcgggtggggcgc
tccaagacgcgcgcctatgcctatctgacaaccaagccgcgcctgccgctgacgccgggg
gcggaaaagcggctgcgggttctgggcagtctcgacacattgggggccgggtttacgctc
gcctcacaggatctcgatattcgcggggcgggcaatctgctgggcgaggaacaatccggg
cagatgcgcgatgtcggctatgaactctatcaatccatgctggaagaggcgattgccaag
atcaaatccggccagatggaggggctgtcggaggctgatgagcaatgggcaccgcagatc
aatctgggcgtgccggtgctgatccccgaggagtatgtgcccgatctcgacgtgcgtctg
gggctttatcgccgcttgagcgggttggagaccaaggtggagttggaaggctttgccgct
gaacttattgaccggttcggcaagctgccgcgcgaggtgaacatgctgatgctggtggtg
cggatcaaggcgatgtgcaaacgcgctggcattgccaagcttgatggcgggccgaaaggg
gccacgatccagtttcacaacgacaagttcgcctcgccgcagggcttggttgaattcatc
aatgacgagcggggtttggccaaggtgcgcgacaacaagatcgtggtgcgccgcgactgg
aaaggcgagagcgaccggatcaagggggcctttggcattgcgcgcgatttggcggagaag
gtcgtggccgaggccaagcgcgccaaggggtga
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