Rhipicephalus microplus (southern cattle tick): 119179437
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Entry
119179437 CDS
T07403
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rmp
Rhipicephalus microplus (southern cattle tick)
Pathway
rmp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rmp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119179437
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rmp03021
]
119179437
03019 Messenger RNA biogenesis [BR:
rmp03019
]
119179437
Transcription machinery [BR:
rmp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119179437
Messenger RNA biogenesis [BR:
rmp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119179437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
CFIA_Pcf11
Motif
Other DBs
NCBI-GeneID:
119179437
NCBI-ProteinID:
XP_037286404
LinkDB
All DBs
Position
1:204986747..205040196
Genome browser
AA seq
1695 aa
AA seq
DB search
MEEDVCEEYKSSLLDLTCNSKPLINMLTMLAEENVQQAPRIVRTIEEHLQKVPIEMKLPV
LYLIDSIMKNVGGDYRALFTQNIVSNFCNVFEKGDERMRMQLFKLRQTWLDIFPNKKLYA
LDTRVKQMDPAWPIIAKEPQQTSIHVNPKFLEAKTKGQEQETMEQQAAKLASLNALNKAT
TEKILNAGVPSTEGEQVQRLLLQKQQEFIFLQRQKLQLELQMQQQQLRQKQEAEQLLKSL
KPPSSVAATHASTSTPVSVGVAVRPQLPRPSAPGAARDPRLQQRSVPSANSNKPPPVSSA
PSLQLGSVIVAPAHGTAQNTASSAPSTVSEKAPPDKRENNKVSAREKHAAIKSPPRKFRI
PKTSDRKKDDEDGGKNGEAEPSSPTKTSPSKSRKNAEDRDERQQHGRAGSGGKSSSSSSS
SGSSSQGRGGKKGRGKNSKGKSEENVRPNGDVEMIDVLPSGDVDMRVQVEKKRDAVDTTQ
EAPQHKRQRGHADDSLADFDYRKPPDRPGGISNASQRGWAQYKAKHPDEFKSPLRPAREN
MDVRDEDLRQMQDSMGRGGYPGPMQPSVDRFGRPVLRKLMTDPRFRSHVGQSGNSDMSLQ
QQQQMYEMLADPDMFLQQTDEQMRAGRLNPDLHRELKAELEKISQFRKSQPQSPIVPLNW
QGGPPGPGFPPWNQLSFGGVNKAMPPLSEPAPGFGTIRVDTKMRKVQFVDDVAVVLMDGS
ETRQIMFKGPPKRVFIDDMEPVSLPFDGTAHEFVSKRTGKKRTIKFGAPLREIFLDGVPY
SAQFDNSPIAIKTADGEVHVIRLEPQPPTVDIEKRPPEHVLRALNLHPEKLADTDSDLRT
LPPEVKLPATESEKSMDVDMRLPSSEAAKDVDLRKRGDVDESGTWNSPQQAGQGGWGQSR
PQQPPEGGFQQNKESGGWVRYGSGSEERAGVGNNWPQQPPLGQPQQDPNIRPPWPRGPPG
PGDWNNNFGNDFMEGRGMPRVGPGRRGNQQPGFGGEEYPSYFREDFPQPQMHPHHVGVGE
VRPGFLQPQFPPCRPHFTAGEPGLPPMGPPRLGGPPPPPQALLASSNLAPPPPLAPPPMV
VAGPHLVGPEAAARGQPVYMVGASQPQPMQQPMQPPLQQPMQQQMQQPMQQQMQQPIQQP
MPQSMQQPPPLQQPMQQPMQPPMQPPMQPPMQPPMQQPLQQPPTQPPALQTAAQQPPLQP
PAMSQMPVATLPSPFPAVLADEHMHQQPSQAPTAAPAPPAALDVNVGELFSKLVAAGILK
QSTGNGNAAGSQPAEQYQSMGAHLQKKKRRRPRGEHTRQEPKKPIEGVPQLSFSRTDQLK
IKHPSVITALHVGTQCASCGLRFTDEKCEKYRQHLDWHFRANRRDKDGARKAFSRKWFYE
VEDWIQFEEIEDLEERARSFFEQQATVEQDQSSNSPTAIKSVPASGDETGNVCAVCEEAF
QLFWAEEEEQWHFRDAIRIENKVYHPACYEDFKRAAEAPSPVKMETEEAQPEVAPQEEDK
SMDVDSGVKEEAATEATTEPIEQSGSDEKQHQEMVVEEAATVAQEGTEGNEAACDKGGLE
IKDENTSGNLQDDPIVVVDNLGEFGVSLSDAEQNNDEEERPPETVEPKVVVKSTGGIVMK
VKAESIQPPVSPVSHSTTADAPDTAEGGGSNEPAAPAPDESASDEEFRPPTPDPRFQSLP
PVQRGNELSGLCCIM
NT seq
5088 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagacgtgtgcgaagagtacaagtcgtcgctgctggatctcacatgcaacagc
aagccgctcatcaatatgctcacgatgttggccgaagagaacgtccagcaagccccgagg
atagtgcgaaccatcgaagagcacttgcagaaggttcccatagaaatgaagctgcctgta
ctatacctaattgattccattatgaagaatgttggtggtgactatcgcgccttgttcaca
caaaacatcgtttccaacttttgcaacgttttcgaaaagggggatgagcgaatgcgcatg
cagctcttcaagttgcgccaaacgtggctggacattttcccaaacaagaagttgtacgcc
ctcgacacacgggtgaaacagatggacccagcctggcctatcatagcaaaggaaccccag
caaacgtcaatacatgtcaaccccaagtttctcgaagctaaaacgaaaggacaagagcag
gagacaatggaacagcaagcagctaagcttgctagtttaaatgcacttaacaaagcaaca
actgaaaagatcttaaatgctggtgtgccttcaacagaaggggaacaagttcagaggttg
cttctgcaaaaacaacaggagttcatcttcctacaaaggcaaaagcttcaacttgagttg
caaatgcagcagcagcaactccggcagaagcaagaagccgagcaactcctgaaaagcctc
aagcccccttccagcgtggcggcaacccatgcgtctacttctactcctgtttctgtcggt
gtggctgttcgtcctcagttgccacgaccatcggcgcctggtgcagcacgtgaccccagg
ttacagcagcgctcagtgccgtcagccaacagtaacaaacctcctccggtttcatctgca
ccatcattgcagcttgggtctgtcatcgtagctccagctcatggtaccgctcaaaacact
gcatcctctgctccatcgaccgtttcagagaaggcacctcccgacaaacgtgaaaacaac
aaggtatctgcccgggagaagcatgccgctatcaagtctccacccagaaagttccgcatt
cctaagacgagtgaccgcaagaaagacgacgaggacggtggaaaaaatggcgaggctgag
ccgtcttcacctacaaagacgtcgccaagcaagtcacgcaagaatgccgaggacagggac
gaaagacagcagcatggcagggctggcagtgggggcaaatcatcgtcatcctcgtcttcg
tcgggttcttcatctcagggcaggggtggaaagaaaggtcgcgggaagaacagcaagggc
aaaagtgaagagaatgtgaggcctaatggtgacgttgaaatgatcgatgtgctgccttca
ggtgatgtggacatgcgcgttcaggtggagaagaaacgagacgctgtggatacaactcag
gaggctccgcagcacaagagacaacgaggtcatgctgatgatagcctcgccgactttgac
tatcgcaagccacctgatcgtccaggaggcatttcaaatgcctcccagcgtggctgggcg
cagtacaaagccaagcacccagatgaattcaaaagcccactacggccagctcgagaaaat
atggacgtcagagacgaggacctccggcaaatgcaggattccatggggagaggtggctac
ccgggacccatgcaaccatctgttgaccgttttggcagacctgtgctccggaaactcatg
actgacccaaggtttcgaagtcacgtgggccagtcgggtaacagtgacatgagccttcag
caacagcagcagatgtacgagatgctggccgatcctgacatgttcctgcagcaaacggat
gagcagatgcgggcaggacgcctcaaccccgacttgcatagggagctgaaagccgagctg
gagaaaatctcccagtttcgcaagtcgcagccacagtcgcccatcgtgcctcttaattgg
caaggaggacctccaggaccagggttcccaccctggaaccaactttcattcggaggtgtg
aacaaagcgatgccccctctttccgagcctgctccaggttttgggactattagggttgac
actaagatgcgcaaagttcagtttgtggatgatgtcgctgtggtgctcatggatggcagt
gagacaagacagatcatgttcaagggaccgccaaagcgtgtctttattgatgacatggaa
cctgtgtctttgccatttgatggcacagcacatgaatttgtttcgaaacgaactggaaag
aagcgtacaatcaagtttggagctccattgcgtgaaatattcctggacggggtgccctac
agtgcgcagtttgacaacagtcctatcgcgatcaaaacagctgatggtgaggtgcatgtg
atcaggctagagccacaacctccaaccgtggacatcgagaagcgaccaccggagcatgta
cttcgcgccctcaaccttcatccggaaaaactggccgacacagactcggatttgcgcacc
cttccaccggaagtaaagcttcctgcgacagagagtgaaaagagtatggatgtcgatatg
agactacctagctccgaagcagcaaaagatgttgacctgaggaaacgtggcgacgtggat
gagagtggcacgtggaatagtccacaacaggcagggcagggtggttgggggcagtcacgg
ccacagcagccgcccgaaggcggttttcagcaaaacaaagagagcggtggctgggttagg
tatggcagtgggtctgaagaacgggcaggtgtcggtaataattggccgcaacagccgccc
ctcggtcagccacaacaagatccaaacattcgtccaccttggccccgagggcccccagga
cctggtgattggaacaacaactttgggaatgatttcatggagggtcgtggcatgccaaga
gtgggcccaggtagaaggggcaatcagcagccaggctttggtggcgaggagtacccctct
tacttccgggaggactttcctcaacctcagatgcaccctcatcacgtcggtgtcggagaa
gttcggccaggcttcctgcagccgcagttcccgccatgcagaccacattttactgccggg
gagccaggactccctccgatgggcccgcctagacttggtggacccccaccaccccctcag
gctcttttggcgtcatcaaacttagctcctcctcctccacttgcaccaccccccatggtg
gttgccgggccgcacctagtggggcctgaggcagctgcccgagggcaaccggtttacatg
gttggagccagccagccgcaaccaatgcagcagcctatgcagccaccacttcagcagcca
atgcaacagcaaatgcagcagccaatgcaacagcaaatgcagcagccaattcagcaacca
atgccgcagtctatgcagcaaccaccaccattacaacaaccaatgcaacagccaatgcag
ccgccaatgcagccaccaatgcagccgccaatgcagccaccaatgcaacagccactgcag
caacctccaacgcaaccacctgccttgcagacagcagcgcagcagccacctctgcaacca
ccagctatgtctcagatgccagtagccacgcttccaagccctttcccagctgtactggca
gatgagcacatgcaccagcagccatcacaagctccaacagctgctccggccccgccagcg
gcattggatgtcaatgtgggtgagctcttctccaagctggttgctgcaggcatcctcaag
cagagcacaggcaatgggaatgcagcagggagccagcctgcagagcagtaccaatcaatg
ggtgcccacttgcagaagaagaaacggaggagaccacgaggcgagcacacaagacaggag
cccaagaagcccattgaaggcgtcccgcagctcagtttctccaggacagaccagctcaag
atcaagcacccaagcgtgatcactgccctgcatgtgggcacccagtgtgcgtcctgcggc
ctgcgattcacagatgagaagtgcgagaagtatcggcagcacttggactggcatttcagg
gccaatcgcagggataaggacggcgcccggaaggccttttcccgaaagtggttctacgaa
gtggaggattggattcagtttgaagagatagaagatctggaggaacgagcgaggagcttc
tttgagcagcaagccaccgtggaacaggaccagagcagcaactcgcccacggcaatcaaa
agtgtcccggcttctggcgacgagaccggcaacgtgtgtgctgtctgtgaagaggctttc
cagcttttctgggcagaagaggaggagcagtggcacttcagggatgccattcgcatcgag
aataaagtgtaccacccagcctgctatgaagacttcaaaagggcggcagaagcacctagt
cctgtcaaaatggagactgaagaagctcaaccggaagttgcccctcaagaggaagataag
agcatggacgtcgactctggcgtcaaggaagaagccgccaccgaagccacaaccgagccc
atcgagcagagtggctccgacgagaagcaacatcaggaaatggtagtggaggaagctgcc
actgtagcacaggaaggtactgagggtaatgaggccgcttgtgataaggggggattagaa
ataaaagatgagaatactagcggcaatttgcaggacgatcccatagtggtagtagataat
ctcggggagtttggagtgtccctgagtgatgctgaacagaacaatgacgaagaagagcga
ccgcctgagacggttgagccaaaagttgtggtcaaaagcactgggggcattgtgatgaaa
gtgaaagcagagagcattcagccaccggtctctcctgtgtctcactcgacaactgccgac
gcgcctgacactgccgagggcggtggcagcaacgagccggcagcacctgcacctgacgag
tccgcaagtgacgaagagttccggccgcctactcccgatccacgttttcagtcactgccg
ccagtgcaaagggggaacgagttatcagggctctgctgcattatgtga
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integrated database retrieval system
