Rhodothermus marinus DSM 4252: Rmar_0615
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Entry
Rmar_0615 CDS
T01119
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
rmr
Rhodothermus marinus DSM 4252
Pathway
rmr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rmar_0615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rmr03019
]
Rmar_0615
Messenger RNA biogenesis [BR:
rmr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rmar_0615
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Paralog
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GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
Motif
Other DBs
NCBI-ProteinID:
ACY47515
UniProt:
D0MFI8
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All DBs
Position
complement(694950..696626)
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AA seq
558 aa
AA seq
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MELLWIAGLALLAVGAGIALDRWLLTRSLKSAREQARKILAEAEAQAQAYQQEHLEKAQE
ALRRERQAFEQEQAEARKALQQAQERLAERQEALNRRTFRVNEREKTLAKAAEAIEALRR
EADANFRQAEALHQQAQALFESLRRQQEALAQRETEVNRLQEELTAKQAELDRTLEEQLR
RLEQIAGMSRQEAKEALMAQLVEEAKLEAASMIKEIRDEARLKANREARKIILTAIQRTA
ASHAIENTVSVVNIQSDEMKGRIIGREGRNIRAFEAATGVEVIVDDTPEAVILSAFNPIR
REIARLALTKLIQDGRIHPARIEEVVEKATAEIEEEIMETGERTVIDLNLHGIHPELIRL
IGRMRYRTSYGQNLLAHSIETARIASLIAAELGLDADKARRAGLLHDIGKVVEEEIDRPH
ALVGMELCRKYREDPEVCNAVGAHHDEIEMTTLIAPIVQAADAISGARPGARREALEAYI
KRLEKLEALAASFPGVERVYAIQAGREVRVIVNHSLVSDAQAEQLALDISKKIQSEMQYP
GQIKVTVIREVRSVAYAK
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggaactgttatggatagccggcctggcgcttctggctgtaggggccggcattgcactg
gatagatggctgctgacccgttctttgaaatccgcccgggagcaggctcgaaaaattctg
gccgaggcggaggctcaagcgcaggcctatcagcaggagcatctggaaaaagcgcaagag
gcgctccggcgtgaacgccaggcgttcgagcaggaacaggccgaagcccgcaaggcgctg
cagcaggcgcaggagcgccttgccgaacgtcaggaggcgctgaaccgccgcacgttccgc
gtcaacgagcgcgagaaaacgctggccaaggccgccgaagccatcgaagcactgcgccgc
gaggccgacgccaatttccgtcaggccgaagcgcttcatcagcaggcacaggccctgttc
gagtcgctgcgccgccagcaggaagcgctcgcgcagcgggaaacggaagtcaaccgcctg
caggaagaactgacggccaaacaggccgagctggaccggacgctggaggaacaactccgg
cggctggagcagatcgcgggcatgtcgcgccaggaagcgaaggaagcgctcatggcgcag
ctggtcgaggaggccaagctggaagcggcttccatgatcaaggaaatccgcgacgaggcc
cgcctgaaggccaaccgcgaggcccgcaagatcatcctgaccgccatccagcggacggcc
gccagccacgccatcgaaaacaccgtctcggtggtcaacattcagtccgacgagatgaag
ggccgcatcatcggacgcgagggccgtaacatccgcgccttcgaagcggccaccggcgtc
gaggtgatcgtcgacgacacgcccgaggcggtgatcctttcggccttcaacccgatccgc
cgcgaaatcgcccggctggcactgaccaagctgatccaggacggtcgcatccacccggcc
cgcatcgaggaagtggtcgaaaaggccacggccgagatcgaagaagagatcatggagacg
ggcgagcggaccgtcatcgatctgaacctgcacggcatacatccggagctgatccggctg
atcggccggatgcgctaccgcacaagctacggccagaacctgctggcccactccatcgag
acggcccgcatcgcctcgctgatcgccgccgagctgggtctggatgccgacaaggcccgc
cgtgccgggctgctgcacgacatcggcaaggtcgtcgaggaagagatcgaccgaccgcac
gcgctggtgggcatggagctctgccgcaagtacagggaggatccggaggtgtgcaatgcg
gtgggtgcccaccacgacgagatcgaaatgaccacgctgatcgcgcccatcgtacaggca
gccgatgcgatctcgggtgcacgtccgggtgcccgtcgcgaggcgctggaagcctatatc
aagcggctggaaaagctcgaggcattggccgcctcgttcccgggcgtcgagcgcgtctac
gcgatccaggccggacgcgaggtgcgtgtgatcgtcaaccacagcctggtctccgacgcc
caggccgagcagctggcgctggacatttcaaagaagatccagagcgagatgcagtatccg
ggccagatcaaggtgacggtcatccgcgaggtgcgctcggtggcctatgccaagtga
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