Rhodothermus marinus DSM 4252: Rmar_2754
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Entry
Rmar_2754 CDS
T01119
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rmr
Rhodothermus marinus DSM 4252
Pathway
rmr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Rmar_2754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmr03400
]
Rmar_2754
Enzymes [BR:
rmr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Rmar_2754
DNA repair and recombination proteins [BR:
rmr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Rmar_2754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
ResIII
UB2H
RecG_dom3_C
AAA_22
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
ACY49624
UniProt:
D0MGR1
LinkDB
All DBs
Position
3188944..3192282
Genome browser
AA seq
1112 aa
AA seq
DB search
MKLTDLHHRLASAAFFEPLHAHLESLTPSTRLHLRGLAGSLPAFVLYELSRHLRRPVLCL
TPDEEQAAYLFSDLEQLLGVSDRLLRFPATGQKPYDPEQIPDSAPLIERTDVLRRLAEGF
DGLLLASAEAIAERVPPPDRVRQETLVLSPGMVIDPAQLLAHLIARGFERVEFVEAPGEV
ALRGGILDVYPFTGTHPIRVEFFGDEIDTIREFDPRTQRSISRLTSAQIVPNLSAADSEE
AAHTLFEHLPDHALLVLFEEGALFDAVQARFAEAEQAYARLNAPDEQPRPEARYLPPAEL
AAHLNRYPALLFGTLAEAERTLTWDTHPQPAFHGNLNLLRERLHENARRGWETVILCDSR
SQEARLHDLLQEEIEAGGVRLLVESLHEGFEVPEARLAVYTDHQIFGRYHRPTTRRRRHL
LGGLSLRALQNLQPGDYVVHVDFGIGQFAGLQRITIRGKQQEVVRLHYADGDVLYVSVNA
LHKLHRYTGREGHQPRLTKLGSGQWEKVKARTKKRVKDIARDLIRLYAKRKASRGFAFSP
DTVWQREMEAAFEYEDTPDQAAAAEAVKRDMEQPVPMDRLVCGDVGFGKTEIAIRAAFKA
VQDGKQVAVLVPTTILADQHYETFTRRLAPYPVRIEVLSRFRSPARQRAVLRDLAAGKVD
IIIGTHRLLSKDVQFKDLGLLIIDEEQRFGVAAKERLRQLRVEVDTLTLTATPIPRTLQF
ALMGARDLSIISTPPPNRQPIVTEIHTFDETLIRDAIRYEISRGGQVFFIHNRVQSIYEM
AARLQAIVPDVRIAVAHGQMKPRELERVMHDFMARKYDVLVSTNIIESGLDIPNANTIII
NHAEQFGLADLHQLRGRVGRSDRKAFCYLLVPSIHGLTREARQRLQAIEEFSELGSGFSI
AMRDLDIRGAGNLLGAEQSGFIEEIGFETYQQILDEAIRELREEEFADVLGAPPPKPPET
SVDVEADAFIPETYVSSNVERLNLYRRLSEATDEAAIEAFREELADRFGPVPPEVDNLLW
AARLKLLGQALRLPKVLFKNRRLFLEFPLQDEDPHFYAHHFMPLLERLSQLDRRYVLKDQ
NRKLRAIVQDVPDLETAYQVLRQLQPAEVPVS
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
gtgaaactgaccgatctgcaccaccgcctggcatcggcggccttcttcgagccgctgcac
gcgcacctggaatccctgaccccttcgacccgcctgcacctgcgcgggctggcgggctcg
ctgcccgccttcgtgctctacgagctgagccgacacctccgccgtcctgtcctctgtctg
acgcccgacgaagaacaggccgcctatctcttcagcgacctggaacagctgctgggcgtc
tcggatcgcctgctgcgctttccggccaccggccagaagccctacgacccggagcagatc
cccgactccgctccgcttatcgaacgcaccgacgtgctgcgccgcctggccgaaggcttc
gacggactgctcctcgccagtgccgaggccatcgccgaacgcgttcccccacccgaccgg
gtccgccaggaaacgctcgtgctcagcccgggcatggtgatcgatcctgcccaacttctg
gcccacctcatcgcccgcggcttcgagcgcgtggagttcgtcgaggcccccggcgaggtg
gccctccgcggcggcatcctcgacgtgtaccccttcaccggcacgcacccgatccgcgtc
gaattcttcggggacgagatcgacacgatccgggaattcgacccgcgcacgcaacgctcc
atcagccgcctgacctcggcccagatcgtcccgaacctgtcggcggccgactccgaggag
gcggcccacacgctcttcgagcacctgcccgatcatgcgctgctcgtcctcttcgaggag
ggcgccctcttcgacgccgtgcaggcccgctttgccgaggccgaacaggcctacgcccgc
ctgaacgcgcccgacgaacagccccgcccggaagcccgctacctgcccccggccgaactg
gccgcccacctgaaccgctacccggccctgctcttcggtacgctggccgaagccgaacgg
acgctgacctgggacacccacccgcagcccgccttccacggcaacctgaacctgctgcgc
gagcgcctgcacgaaaacgctcggcgcggctgggaaaccgtcatcctgtgcgacagccgg
agccaggaggcccgcctgcacgacctgctccaggaagaaatcgaagcgggcggtgtgcgc
ctgctcgtcgaatcgctccacgaaggcttcgaggtgcccgaagcccgtctggccgtctac
acggaccaccagatcttcggccgctaccaccgccccaccacccggcgtcggcgccacctg
ctgggcggcctgtcgctccgcgccctgcagaacctccagcccggcgactacgtggtgcac
gtcgatttcggcatcggccagttcgccggcctgcagcgcatcaccatacggggcaagcag
caggaggtcgtccgcctccactacgccgacggcgacgtgctctacgtgagcgtcaacgcg
ctccacaagctgcaccgctacacgggtcgagagggccatcagccccgcctgaccaagctg
ggctcgggccagtgggaaaaggtcaaggcccgcacgaaaaaacgcgtcaaggacatcgcg
cgcgacctgatccgactctacgcgaaacgcaaggcctcccgcggcttcgccttctcgccc
gacacggtctggcaacgcgaaatggaagcggccttcgagtacgaggatacgcccgaccag
gccgccgcggccgaggccgtcaagcgcgacatggagcagcccgtgcccatggaccggctc
gtgtgcggcgacgtgggcttcggcaagaccgagatcgccatccgcgccgccttcaaagcc
gtacaggacggcaagcaggtggccgtgctcgtgcccaccacgatcctggccgaccagcac
tacgagacgttcacgcgtcggctggccccctacccggtccgcatcgaagtgctttcgcgc
ttccgctcgcccgcccggcaacgggccgtcctgcgcgatctggccgccggcaaggtggac
atcatcatcggcacgcaccgcctgctctcgaaagacgtgcagttcaaagacctgggcctg
ctcatcatcgacgaagagcagcgcttcggggtggccgccaaagagcgcctgcgccagctc
cgcgtcgaggtggacacgctcacgctgacggccacgcccatcccccgcacgctccagttt
gccctgatgggcgcccgcgatctgtcgatcatctccacgccgccgcccaaccgccagccc
atcgtcaccgagatccatacgttcgacgaaacgctcatccgcgacgccatccgctacgag
atcagccgcggcggtcaggtcttcttcatccacaaccgcgtgcagtccatctacgagatg
gccgcccgcctgcaggccatcgtaccggacgtgcgcatcgccgtggcacacggtcagatg
aagccccgcgagctggagcgcgtcatgcacgacttcatggcgcgcaagtacgacgtgctc
gtctcgacgaacatcatcgaaagcggcctggacatccccaacgcgaacacgatcatcatc
aaccacgccgagcagttcggactggccgacctgcaccagctccgcggccgcgtcggacgc
tccgaccgcaaggccttctgctacctgctcgtgccctccattcacgggctcacacgcgag
gcgcgccagcgcctgcaggccatcgaggaattcagcgagctggggagcggcttttccatc
gcgatgcgcgacctggacatccgcggcgcgggcaacctgctgggcgccgagcagagcggc
ttcatcgaagagatcggctttgaaacctatcagcagattctcgacgaggcgatccgcgag
ctgcgcgaggaggaatttgcggacgtgctgggcgccccgcctccgaagccgcccgaaacg
agcgtggacgtcgaggccgatgcgttcatcccggaaacctacgtcagcagcaacgtggag
cggctcaacctgtaccgccgcctgagcgaggcgaccgacgaagcggccatcgaagccttc
cgcgaggagctggccgaccggttcgggccggttccgcccgaagtggacaacctgctctgg
gccgcccgcctcaaactgctgggccaggcgctgcgcctgccgaaggtgctcttcaaaaat
cggcggctctttctggaatttccgctccaggacgaagacccgcacttctacgcgcaccat
ttcatgccgctactggaacggctgagccagctcgaccgccgctacgtgctgaaggaccag
aacagaaagctgcgggccatcgtgcaggacgtgcccgatctggaaacggcctatcaggtg
cttcgccagcttcagcccgccgaagtgccggtctcctga
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