Roseomonas marmotae: IAI58_11290
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Entry
IAI58_11290 CDS
T08030
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rmt
Roseomonas marmotae
Pathway
rmt03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
IAI58_11290 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmt03400
]
IAI58_11290 (mfd)
Enzymes [BR:
rmt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
IAI58_11290 (mfd)
DNA repair and recombination proteins [BR:
rmt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
IAI58_11290 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
UB2H
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QTI78281
LinkDB
All DBs
Position
complement(2381532..2384993)
Genome browser
AA seq
1153 aa
AA seq
DB search
MTALTVHGAPEGFDALLLARRRAEAKGHVLHVCRDDARMARMQDGLAFFAPGVEVLSFPA
WDSLPYDRVSPNGELVAERVATLTRLLEGSSKPRIVLTTVNALVQRVPPAETFADATLHL
KKGGRIGPEKLAGFLEANGYGRTATVMEPGEYSVRGGIVDLYPAGEPEPVRLDLFGDEIE
SLRRFSPETQRSGQEIKELWLRPVGEVVLDEASIARFRSGYRDLFGPAAGDDPLYVSISA
GRRHPGMEHWAGLFHERMATLLDYIPGASVSLDYQAEDALEARLEMIEDHYQARKGPGRD
GEVPYRPVPPGRLYLDRRGWDAMLSGGPLLRFDPFPKADGAEGIEAGGRPGRLYAEVRTA
GENVFAAYREQAEAQAKQGLRPVLAAWTKGSRERLGNLLRENKVPAQTVDDWSAARKLPT
GVVALAVLGVERGFIGPADEKALAIALTGEQDLLGDRIARPPRRRKRADQFIADATEIAE
GDLVVHQDHGIGRYDGLSTIEVSGAPHDCLRLIYDGGDKLFLPVENIELLSRFGSDSAGV
ALDKLGGASWQNRKAKAKQRIADMAGQLIRVAAERQMKEAPLATPPEGAWDEFCARFPFA
ETEDQQRAIADVLEDLASGRPMDRLICGDVGFGKTEIALRAAFVVAMTGAQVAVVVPTTL
LSRQHFRTFSARFAGMPVKVAQLSRMVTAKEAAQVKAGLADGSINVVVGTHALLAKGITF
ADLGLVIVDEEQHFGVSHKERLKSLKADVHVLTLTATPIPRTLQLALTGVREMSVIATPP
VDRLAVRTFIMPFDAVVVREAIQRERFRGGQIFCVVPRLEDLPKMASRLAEIVPEARTVQ
AHGRLSPTELERVMTEFGDGKYDILLATNIVESGLDMPAVNTLIIYRADMFGLAQLYQLR
GRVGRGKQRGYAYLTWPATQRLSVAAEKRLAVMQTLDNLGAGFTLASHDLDIRGAGNLLG
DEQSGHVREVGIELYQQMLEEAVANLKAGQGRRGEIEDRDWTPQINLGLPVLIPETYVSD
LPVRLGLYRRIGGLAGDAEVEAMAAELADRFGPLPPEVENLLQVVSIKHHCRQAGVEKLD
AGPKGIVITFRRNNFANPAGLVEWVTAQKGLVKLRPDHKLAMVREMDLPTRVRASRDMLA
SLAKVARQVRKAA
NT seq
3462 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgctcacggttcatggggcacccgagggcttcgacgcgctgctgctggcgcgc
cgtcgcgcggaggcgaaggggcatgtgctgcatgtctgccgcgacgacgcccgcatggcg
cggatgcaggatggcctggccttcttcgcccccggcgtcgaggtcctgagtttccccgcc
tgggatagcctgccctatgaccgtgtctccccgaacggggagctggtggcggagcgggtg
gccaccctgacccggctgctggagggcagcagcaagccgcgcatcgtgctgaccaccgtc
aatgcgctggtgcagcgggtcccacccgcggagaccttcgccgatgccacgctgcacctg
aagaagggcgggcgcatcgggccggagaagctggcgggattcctggaagccaatggctac
ggccgcaccgccacggtgatggagccgggcgaatactccgtgcgcggcgggatcgtggac
ctctatccggcgggcgagccggaaccggtgcggcttgacctcttcggcgatgagatcgag
agcctgcgccgcttctcgcccgagacccagcgcagcggtcaggaaatcaaggagctatgg
ctgcggccggtgggcgaggtcgttctggacgaagcctccatcgcccgtttccgcagtggc
taccgtgatctctttggcccggccgcgggggatgatccgctctacgtctccatctccgcc
ggccggcgccacccaggcatggagcactgggccgggctgttccatgaacggatggcgacg
ctgctggattatattcccggcgcctccgtcagcctcgactaccaagccgaggacgcgctg
gaagcgcgcctcgagatgatcgaggaccactaccaagcccgcaaggggcccggacgggat
ggggaggtgccttatcggccggtgccaccaggccgcctctacctggaccggcgcggctgg
gacgccatgctctccggcggacccctgctgcgcttcgaccctttccccaaggctgacggc
gccgagggtatcgaggccggcggccggcccggacggctctatgccgaggtgcggacggcg
ggagagaatgtcttcgccgcctatcgcgagcaggcagaggcgcaggccaagcagggcttg
cggccggtgctcgctgcctggaccaaagggtcgcgtgagcgtctgggcaacctgctgcgg
gagaacaaggttcccgcccagaccgtggatgactggtccgccgcccgcaagctgcccacc
ggtgtggtggcgctggcggtgctgggcgtggagcgcggcttcatcggcccggcggatgag
aaggcgctggcgatcgccctgaccggcgagcaggacctgctgggcgaccgcatcgcccgc
ccgccgcgccgccggaagcgtgccgaccagttcatcgccgatgcgacggagatcgccgag
ggcgacctggtggtgcatcaggaccacggcatcggccgctatgacggcctctcgaccatc
gaggtctcaggcgcgccgcatgactgcctacggctgatctatgacggcggggacaagctc
ttcctgccggtcgagaatatcgagctgctctcccgcttcggcagcgacagtgccggggtg
gcgctggacaagctgggcggcgcttcctggcagaaccgcaaggccaaggccaagcagcgt
atcgccgacatggccgggcagctgatccgcgtcgccgccgagcggcagatgaaggaggcg
ccgctcgcaacgccgcctgaaggagcctgggacgagttctgcgcccgcttccccttcgcc
gagacggaggaccagcagcgcgccatcgcggacgtgttggaggatctggccagcggccgg
cccatggaccggctgatctgcggcgatgtgggcttcggcaagaccgagatcgccctgcgt
gccgccttcgtcgtcgccatgaccggcgcccaggtggcggtggtggtgccgactacactg
ctctcccgccagcatttccgcacgttctccgcacggttcgcgggaatgcccgtcaaggtg
gcgcagctctcccgcatggtcacggccaaggaggcagcgcaggtcaaggcggggctcgcc
gatggctcgatcaatgtcgtcgtcggcacccatgcgctgctggccaagggcatcaccttc
gccgatctcggcttggtcatcgtggatgaggagcagcatttcggcgtctcccacaaggag
cggctgaaatcgctaaaggccgatgtccatgtgctgacgctcacggccacgccgatcccg
cgcaccctgcaactggccctgacgggcgtgcgagaaatgagcgtcatcgccacgccgccg
gtggaccgcctggccgtgcgcaccttcatcatgccctttgatgccgtggtggtgcgggag
gccatccagcgcgagcgcttccgcggcgggcagatcttctgcgtggtgccgcggctggag
gacctgccgaagatggcctcccgcctggccgagatcgtgccggaggcgcggaccgtgcag
gcccatggccgcctctcgcctaccgaactcgagcgggtgatgaccgagttcggcgacggc
aaatacgacatcctgctggcaaccaatatcgtcgagagcgggctggacatgccggcagtg
aatacgctgatcatctaccgcgccgacatgttcgggctcgcgcagctctatcagcttcgt
gggcgcgtcgggcgtggcaagcaacgtggctatgcctacctgacctggcctgccacccag
cggctgtcggttgccgccgagaagcggctggcggtgatgcagaccctggataacctcggc
gccggcttcaccctggccagtcatgacctggacatccgtggcgccggcaatctgctgggt
gacgagcagtccggccatgtacgggaggtcgggatcgaactctaccagcagatgctggag
gaggcggtcgccaacctgaaagccggccagggcaggcgtggcgagattgaggaccgcgac
tggaccccgcagatcaacctgggcctgcccgtgctgatcccggagacctacgtttccgac
ctgcctgtccggctgggcctgtaccgccgcatcggcggcctcgccggcgatgcggaagtg
gaagccatggccgctgaactggcggaccgcttcggcccgctgccgccggaggtggagaac
ctgttgcaggtggtttccatcaagcaccattgccgccaggcgggcgtggagaagctggat
gccggccccaagggcatcgttatcaccttccgccgcaacaacttcgccaacccggcaggg
ctggtggaatgggtgacggcgcagaaggggctggtgaagctgcggccggaccataagctg
gccatggtgcgggagatggatctgcccacacgcgtccgggcgagcagggacatgttggcg
tcgctggcgaaggtcgcgcggcaggtgaggaaggccgcctga
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