Roseomonas marmotae: IAI58_21850
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Entry
IAI58_21850 CDS
T08030
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rmt
Roseomonas marmotae
Pathway
rmt03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rmt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
IAI58_21850 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rmt03400
]
IAI58_21850 (ligD)
Enzymes [BR:
rmt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
IAI58_21850 (ligD)
DNA repair and recombination proteins [BR:
rmt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
IAI58_21850 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QTI81977
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All DBs
Position
p1318-4:complement(293759..296329)
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AA seq
856 aa
AA seq
DB search
MPQIGGLDRYNAKRDFTRSAEPRGKAARRRKGAPQFVVQKHDATRLHFDFRLELDGSLKS
WAVTRGPSLDPADKRLAVQVEDHPLDYAGFEGTIPAGEYGGGTVMLWDRGTWESLDDDPA
AAMAAGKLKFRLHGERMQGGWTLVRMRARGRETKPQWLLIKEKDDEARPGEGESLIGTAE
TSVASGRSMEEIAGKSGASATTDPRRAKPKRAKAAAPAEEEGAAASGVFIPPQLCSTSPE
APGGADWVHEVKLDGYRLQAQISGGKARLLTRSGQDWTHRFPQTAAALGGLPDSILDGEL
VATDAEGHPDFAALIAAMDRKRTNELRFFAFDLLASAGRDWRPHPLRERKAALRALLDGA
PPEITYVEHFPASGDAILRSACQAGLEGVVSKRLGAPYRSGRGEDWVKTKCRGNDEFVIG
GHGTGPKGNMTLLLGAWREGRLVYLGRVGSGISGARAAELKTLLQPLARKTSPFATSPAP
GDRRGAHWVEPRLVAEVDYAGWTGEGRIRQASFKGLREDKPAEAVEPPGAIAGQDPPPVP
APGKRTASPAGSGGSVAGVRLSHPEKLLWPKDGVTKRDLAEYYAAVAPKLLDYAGGRLVS
LLRAPDGIEGARFFQRHPGAGTSALLKRVPLKGEEEPFLMVDSAEALVALAQSGVLEIHP
GGARADDTERPDRLVFDIDPDEGLAFSAVMDAAREVKARLEELGLAGFVKTTGGKGLHVV
TPLRPGAQWPEARLFCEALCKLMVQQAPGRYTATMAKSARKGRIFLDYLRNDRTASAVAA
WSPRARPGATVSMPLAWEELEKDFDPRAFTIRTAPGRMDGPDPWKGYAAAARPLPRPREK
SAGRKSPARRGGKEKS
NT seq
2571 nt
NT seq
+upstream
nt +downstream
nt
atgccgcagataggcggtctggaccgctacaacgccaagcgcgatttcacccgcagcgcc
gagccgcgcggcaaggcggcgcggcgccgcaagggcgctccgcagttcgtggtgcagaag
cacgacgccacgcggctgcatttcgattttcgcctggaactggatggaagcctgaaaagc
tgggcggtaacgcgcggccccagcctggaccccgctgacaagcgcctggccgtgcaggtg
gaggaccatccgctggattatgcggggttcgagggcaccattcccgccggcgaatatggc
ggcggcacggtgatgctgtgggaccgcggcacctgggaaagcctggatgacgaccccgcc
gccgcgatggccgccggcaagctgaaattccgcctccatggggagcggatgcagggcggc
tggacgctcgtgcggatgcgcgcgcgagggcgcgagaccaagccgcaatggctgctgatc
aaggaaaaggatgatgaggcccgccccggcgagggcgagagcctgatcgggacggcggag
acctccgtcgcctccggccgctcgatggaggagatcgccggcaaatccggcgcctctgcc
acgacggatcccagacgggcgaaaccgaagcgggcgaaggccgctgccccggcagaggaa
gagggcgcagccgcgtccggcgtattcatcccgccgcagctgtgctcgacctcgccggaa
gcgcccggcggggccgactgggtgcatgaggtgaagctggatggctaccggcttcaggcg
cagatctccggcggcaaggcgcggctgctgacccgcagcggccaggactggactcatcgc
ttcccgcaaaccgccgccgcgctgggcgggctgccggacagtatcctggatggcgagctg
gtcgcgacggatgccgaggggcatcccgacttcgccgcgctgatcgccgccatggaccgc
aagcgcacgaatgagctgcgcttcttcgctttcgaccttctggcatcggcgggcagggac
tggcgcccgcatccgctgcgggagcgcaaggccgcccttcgggcattgctggatggcgcg
ccgccggagatcacctatgtcgagcatttcccggcctcgggcgatgccatccttcgttcg
gcctgccaggccgggctggaaggcgtggtgtcgaagcggctgggcgccccctaccgctca
ggccggggcgaggactgggtgaagacgaaatgccggggcaatgatgaattcgtcatcggc
ggccatggcacagggcccaagggcaatatgacgctgttgctcggcgcgtggcgggagggg
cggctggtctatctgggccgcgtcggctccggcatttccggcgcccgcgcggcggagctg
aagacgttgttgcagccgctggcgcgcaagacctccccctttgccaccagcccggccccg
ggcgaccgccgaggtgcccactgggtcgagccgcgactggtggccgaggtggactacgcc
ggctggaccggggaggggcgtatccgccaggcttccttcaaggggctgcgggaggacaag
ccagccgaggcggtggagccgcccggcgccatcgcgggccaggacccgccgcccgtgccg
gcaccggggaagcgcactgcgtcaccggccggcagcggcgggagcgtcgcgggcgtgcgg
ctgagccacccggagaagctgctctggccgaaggacggcgtgacgaagcgcgacctggcg
gaatactacgcggccgtggcaccgaagctgctggactatgcgggcgggcgtctcgtctcc
ctcctgcgggcgccggatggcatcgagggggcgcgcttctttcagcgccatccgggcgcc
ggcacctcggcgctgctgaagcgcgtgccgctgaagggtgaagaggaacccttcctgatg
gtcgacagcgccgaggccctggtcgccctggcgcagtccggcgtgctggagatccacccc
ggcggcgcgcgcgcggacgataccgagcgcccggaccggctggtcttcgacatcgacccg
gatgaggggctggccttctccgccgtcatggacgcggcgcgggaggtgaaggcccggctg
gaggaacttggcctcgcgggtttcgtcaagaccaccgggggcaaggggctgcatgtcgtt
acgccgctgcgccccggcgcgcagtggccggaggcccggctcttctgcgaggcgctctgc
aagctgatggtccagcaggcgcccggccgctacacggccaccatggccaagagcgcccgc
aaggggcgcatcttcctggactacctccgcaacgaccgcaccgcctcggccgtcgccgcc
tggtcgccccgcgcgcggccgggcgccacggtctccatgcccctggcctgggaggaactg
gaaaaggacttcgatccccgcgccttcaccatccgcacggcgccggggcgaatggatggc
cccgacccctggaaaggctatgccgccgccgcgcgcccgctgccccggccgcgagagaag
tccgccggcaggaaatcccccgcccggcgcggcggcaaggagaagtcatga
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