Rattus norvegicus (rat): 293165
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Entry
293165 CDS
T01003
Symbol
Sox6
Name
(RefSeq) transcription factor SOX-6
KO
K09269
transcription factor SOX5/6/13 (SOX group D)
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rno03000
]
293165 (Sox6)
Transcription factors [BR:
rno03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
293165 (Sox6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
Motif
Other DBs
NCBI-GeneID:
293165
NCBI-ProteinID:
NP_001019922
RGD:
1309000
Ensembl:
ENSRNOG00000020514
UniProt:
A0A0G2JTZ2
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Position
1:complement(179157678..179769243)
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AA seq
787 aa
AA seq
DB search
MSSKQATSPFACTVDGEETMTQDLTSREKEEGSDQHPASHLPLHPIMHNKPHSEELPTLV
STIQQDADWDSVLSSQQRMESENNKLCSLYSFRNTSTSPHKPDEGSREREIMNSVTFGTP
ERRKGSLADVVDTLKQKKLEEMTRTEQEDSSCMEKLLSKDWKEKMERLNTSELLGEIKGT
PESLAEKERQLSTMITQLISLREQLLAAHDEQKKLAASQIEKQRQQMDLARQQQEQIARQ
QQQLLQQQHKINLLQQQIQQVQGHMPPLMIPIFPHDQRTLAAAAAAQQGFLFPPGITYKP
GDNYPVQFIPSTMAAAAASGLSPLQLQQLYAAQLASMQVSPGAKMPSTPQPPNSAGAVSP
TGIKNEKRGTSPVTQVKDETTAQPLNLSSRPKTAEPVKSPTSPTQSLFPASKTSPVNLPN
KSSIPSPIGGSLGRGSSLDILSSLNSPALFGDQDTVMKAIQEARKMREQIQREQQQQPHG
VDGKLSSMNSMGLSNCRNEKERTRFENLGPQLTGKSSEDGKLGPGVIDLTRPEDAEGSKA
MNGSAAKLQQYYCWPTGGATVAEARVYRDARGRASSEPHIKRPMNAFMVWAKDERRKILQ
AFPDMHNSNISKILGSRWKSMSNQEKQPYYEEQARLSKIHLEKYPNYKYKPRPKRTCIVD
GKKLRIGEYKQLMRSRRQEMRQFFTVGQQPQIPITTGTGVVYPGAITMATTTPSPQMTSD
CSSTSASPEPSLPVIQSTYGMKMDGASLAGNDMINGEDEMEAYDDYEDDPKSDYSSENEA
PEPVSAN
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccaagcaagccacctctccatttgcctgtacagtggatggagaggaaacaatg
acccaggatttgacctcaagggaaaaggaagagggcagtgatcaacacccggcctcccat
ctgcctctgcaccccataatgcacaacaaacctcactctgaggagctgccgacgcttgtc
agtaccattcaacaagatgctgactgggacagcgttctgtcatctcagcaaagaatggag
tcagagaataataagttatgttccctatattccttccgaaatacgtctacctcaccacat
aagcctgacgaagggagtcgggagcgggaaataatgaacagtgttacttttggaaccccg
gaacgccgcaaagggagccttgccgatgtggtggatacgctgaagcagaagaagctggag
gagatgactcggacggaacaagaggattcctcctgcatggaaaaactactttcaaaagat
tggaaggaaaaaatggaaagactaaatacgagtgaacttcttggagaaatcaaaggtaca
cctgagagccttgcagagaaagaacggcaactctccaccatgattacccagctgatcagc
ttgcgggagcagctcctggcagcgcacgatgaacagaaaaagctggcagcctcgcagatc
gagaaacagcggcagcaaatggaccttgctcgccaacagcaagaacagatcgcaagacaa
cagcagcaacttctacagcagcagcacaagattaatctcctgcagcaacagatccagcag
gttcaggggcacatgcctccgctcatgatcccaatttttccacatgaccagcggaccttg
gcagcagctgctgccgcccaacagggattcctcttcccccctggaataacatacaagcca
ggtgataactaccccgtacagttcattccgtcaacaatggcagctgctgctgcttctgga
ctcagccctttacagcttcagcagctctatgccgctcagctggccagcatgcaggtgtca
cctggagcaaagatgccatcaactccgcagccaccaaactcagcaggggcggtctcacct
actgggataaaaaatgaaaagagagggaccagccctgtaactcaagttaaggatgaaaca
acagcccagccactgaatctctcatcccggccgaagacagcagagcctgtgaagtcccca
acatctcccacccagagcctcttcccagccagcaaaaccagccctgtcaacctgccaaac
aagagcagcatccccagccccatcgggggaagcctggggagaggatcctctttagatata
ctatccagtctcaactctcctgccctgtttggggaccaggacacagtgatgaaagctatc
caggaggctcggaagatgcgagaacagatccagcgggagcagcaacagcagccgcacgga
gttgatgggaagctgtcctccatgaacagcatggggctgagcaactgcaggaatgagaag
gaaagaacacgctttgagaacctgggtccccaattaacaggaaagtcaagtgaagatgga
aagctgggccctggtgtcatcgatctgactcggccagaggacgcagaaggaagcaaagca
atgaatggctctgcagctaaactacagcagtattattgttggccaacaggaggcgccact
gtggctgaagcacgcgtctacagggatgcccgaggccgtgccagcagcgagccccacatc
aagcgaccaatgaatgcgttcatggtttgggcaaaggacgaaaggaggaaaattcttcag
gccttccctgacatgcataactccaacattagcaaaatcttaggatctcgctggaaatcc
atgtccaaccaggagaagcaaccttactatgaagagcaggcccggctaagcaaaatccac
ctagagaagtacccaaactacaagtacaaaccccggccgaagcgcacgtgcattgtggac
ggcaagaagctccggatcggggagtacaagcagctgatgcgctcacgaaggcaggagatg
cgacagttcttcactgtggggcaacagcctcagattcccatcaccacaggaacaggtgtt
gtgtatcctggtgctattactatggcaacgaccacaccatcacctcagatgacatctgac
tgctctagcacctctgccagcccagagcccagcctccctgtcatccagagcacgtatggt
atgaagatggacggcgcgagcctggctgggaacgacatgattaatggcgaggatgaaatg
gaagcctatgacgactacgaagatgatcccaaatcagactatagcagcgaaaacgaggcc
ccagagcctgtcagtgccaactga
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