Rattus norvegicus (rat): 29571
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Entry
29571 CDS
T01003
Symbol
Scn10a
Name
(RefSeq) sodium channel protein type 10 subunit alpha
KO
K04842
voltage-gated sodium channel type X alpha
Organism
rno
Rattus norvegicus (rat)
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
rno04040
]
29571 (Scn10a)
Ion channels [BR:
rno04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
29571 (Scn10a)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
PKD_channel
Na_trans_cytopl
GPHH
CcmD_alt
IQ
Motif
Other DBs
NCBI-GeneID:
29571
NCBI-ProteinID:
NP_058943
RGD:
3629
Ensembl:
ENSRNOG00000032473
UniProt:
Q62968
LinkDB
All DBs
Position
8:complement(128228424..128340749)
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AA seq
1956 aa
AA seq
DB search
MELPFASVGTTNFRRFTPESLAEIEKQIAAHRAAKKARTKHRGQEDKGEKPRPQLDLKAC
NQLPKFYGELPAELVGEPLEDLDPFYSTHRTFMVLNKSRTISRFSATWALWLFSPFNLIR
RTAIKVSVHSWFSIFITITILVNCVCMTRTDLPEKVEYVFTVIYTFEALIKILARGFCLN
EFTYLRDPWNWLDFSVITLAYVGAAIDLRGISGLRTFRVLRALKTVSVIPGLKVIVGALI
HSVRKLADVTILTVFCLSVFALVGLQLFKGNLKNKCIRNGTDPHKADNLSSEMAEYIFIK
PGTTDPLLCGNGSDAGHCPGGYVCLKTPDNPDFNYTSFDSFAWAFLSLFRLMTQDSWERL
YQQTLRASGKMYMVFFVLVIFLGSFYLVNLILAVVTMAYEEQSQATIAEIEAKEKKFQEA
LEVLQKEQEVLAALGIDTTSLQSHSGSPLASKNANERRPRVKSRVSEGSTDDNRSPQSDP
YNQRRMSFLGLSSGRRRASHGSVFHFRAPSQDISFPDGITDDGVFHGDQESRRGSILLGR
GAGQTGPLPRSPLPQSPNPGRRHGEEGQLGVPTGELTAGAPEGPALDTTGQKSFLSAGYL
NEPFRAQRAMSVVSIMTSVIEELEESKLKCPPCLISFAQKYLIWECCPKWRKFKMALFEL
VTDPFAELTITLCIVVNTVFMAMEHYPMTDAFDAMLQAGNIVFTVFFTMEMAFKIIAFDP
YYYFQKKWNIFDCVIVTVSLLELSASKKGSLSVLRTFRLLRVFKLAKSWPTLNTLIKIIG
NSVGALGNLTFILAIIVFIFALVGKQLLSEDYGCRKDGVSVWNGEKLRWHMCDFFHSFLV
VFRILCGEWIENMWVCMEVSQKSICLILFLTVMVLGNLVVLNLFIALLLNSFSADNLTAP
EDDGEVNNLQLALARIQVLGHRASRAIASYISSHCRFRWPKVETQLGMKPPLTSSEAKNH
IATDAVSAAVGNLTKPALSSPKENHGDFITDPNVWVSVPIAEGESDLDELEEDMEQASQS
SWQEEDPKGQQEQLPQVQKCENHQAARSPASMMSSEDLAPYLGESWKRKDSPQVPAEGVD
DTSSSEGSTVDCPDPEEILRKIPELADDLDEPDDCFTEGCTRRCPCCNVNTSKSPWATGW
QVRKTCYRIVEHSWFESFIIFMILLSSGALAFEDNYLEEKPRVKSVLEYTDRVFTFIFVF
EMLLKWVAYGFKKYFTNAWCWLDFLIVNISLTSLIAKILEYSDVASIKALRTLRALRPLR
ALSRFEGMRVVVDALVGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFSKCVDTRNNPFS
NVNSTMVNNKSECHNQNSTGHFFWVNVKVNFDNVAMGYLALLQVATFKGWMDIMYAAVDS
GEINSQPNWENNLYMYLYFVVFIIFGGFFTLNLFVGVIIDNFNQQKKKLGGQDIFMTEEQ
KKYYNAMKKLGSKKPQKPIPRPLNKYQGFVFDIVTRQAFDIIIMVLICLNMITMMVETDE
QGEEKTKVLGRINQFFVAVFTGECVMKMFALRQYYFTNGWNVFDFIVVILSIGSLLFSAI
LKSLENYFSPTLFRVIRLARIGRILRLIRAAKGIRTLLFALMMSLPALFNIGLLLFLVMF
IYSIFGMASFANVVDEAGIDDMFNFKTFGNSMLCLFQITTSAGWDGLLSPILNTGPPYCD
PNLPNSNGSRGNCGSPAVGIIFFTTYIIISFLIVVNMYIAVILENFNVATEESTEPLSED
DFDMFYETWEKFDPEATQFIAFSALSDFADTLSGPLRIPKPNQNILIQMDLPLVPGDKIH
CLDILFAFTKNVLGESGELDSLKTNMEEKFMATNLSKASYEPIATTLRWKQEDLSATVIQ
KAYRSYMLHRSLTLSNTLHVPRAEEDGVSLPGEGYVTFMANSGLPDKSETASATSFPPSY
DSVTRGLSDRANINPSSSMQNEDEVAAKEGNSPGPQ
NT seq
5871 nt
NT seq
+upstream
nt +downstream
nt
atggagctcccctttgcgtccgtgggaactaccaatttcagacggttcactccagagtca
ctggcagagatcgagaagcagattgctgctcaccgcgcagccaagaaggccagaaccaag
cacagaggacaggaggacaagggcgagaagcccaggcctcagctggacttgaaagcctgt
aaccagctgcccaagttctatggtgagctcccagcagaactggtcggggagcccctggag
gacctagaccctttctacagcacacaccggacattcatggtgttgaataaaagcaggacc
atttccagattcagtgccacttgggccctgtggctcttcagtcccttcaacctgatcaga
agaacagccatcaaagtgtctgtccattcctggttctccatattcatcaccatcactatt
ttggtcaactgcgtgtgcatgacccgaactgatcttccagagaaagtcgagtacgtcttc
actgtcatttacaccttcgaggctctgattaagatactggcaagagggttttgtctaaat
gagttcacttatcttcgagatccgtggaactggctggacttcagtgtcattaccttggcg
tatgtgggtgcagcgatagacctccgaggaatctcaggcctgcggacattccgagttctc
agagccctgaaaactgtttctgtgatcccaggactgaaggtcatcgtgggagccctgatc
cactcagtgaggaagctggccgacgtgactatcctcacagtcttctgcctgagcgtcttc
gccttggtgggcctgcagctctttaaggggaaccttaagaacaaatgcatcaggaacgga
acagatccccacaaggctgacaacctctcatctgaaatggcagaatacatcttcatcaag
cctggtactacggatcccttactgtgcggcaatgggtctgatgctggtcactgccctgga
ggctatgtctgcctgaaaactcctgacaacccggattttaactacaccagctttgattcc
tttgcgtgggcattcctctcactgttccgcctcatgacgcaggactcctgggagcgcctg
taccagcagacactccgggcttctgggaaaatgtacatggtctttttcgtgctggttatt
ttccttggatcgttctacctggtcaatttgatcttggccgtggtcaccatggcgtatgaa
gagcagagccaggcaacaattgcagaaatcgaagccaaggaaaaaaagttccaggaagcc
cttgaggtgctgcagaaggaacaggaggtgctggcagccctggggattgacacgacctcg
ctccagtcccacagtggatcacccttagcctccaaaaacgccaatgagagaagacccagg
gtgaaatcaagggtgtcagagggctccacggatgacaacaggtcaccccaatctgaccct
tacaaccagcgcaggatgtctttcctaggcctgtcttcaggaagacgcagggctagccac
ggcagtgtgttccacttccgagcgcccagccaagacatctcatttcctgacgggatcacg
gatgatggggtctttcacggagaccaggaaagccgtcgaggttccatattgctgggcagg
ggtgctgggcagacaggtccactccccaggagcccactgcctcagtcccccaaccctggc
cgtagacatggagaagagggacagctcggagtgcccactggtgagcttaccgctggagcg
cctgaaggcccggcactcgacactacagggcagaagagcttcctgtctgcgggctacttg
aacgaacctttccgagcacagagggccatgagcgttgtcagtatcatgacttctgtcatt
gaggagcttgaagagtctaagctgaagtgcccaccctgcttgatcagcttcgctcagaag
tatctgatctgggagtgctgccccaagtggaggaagttcaagatggcgctgttcgagctg
gtgactgaccccttcgcagagcttaccatcaccctctgcatcgtggtgaacaccgtcttc
atggccatggagcactaccccatgaccgatgccttcgatgccatgcttcaagccggcaac
attgtcttcaccgtgtttttcacaatggagatggccttcaagatcattgccttcgacccc
tactattacttccagaagaagtggaatatcttcgactgtgtcatcgtcaccgtgagcctt
ctggagctgagcgcatccaagaagggcagcctgtctgtgctccgtaccttccgcttgctg
cgggtcttcaagctggccaagtcctggcccaccctgaacaccctcatcaagatcatcggg
aactccgtgggggccctgggcaacctgacctttatcctggccatcatcgtcttcatcttc
gccctggtcggaaagcagcttctctcagaggactacgggtgccgcaaggacggcgtctcc
gtgtggaacggcgagaagctccgctggcacatgtgtgacttcttccattccttcctggtc
gtcttccgaatcctctgcggggagtggatcgagaacatgtgggtctgcatggaggtcagc
cagaaatccatctgcctcatcctcttcttgactgtgatggtgctgggcaacctagtggtg
ctcaaccttttcatcgctttactgctgaactccttcagcgcggacaacctcacggctcca
gaggatgacggggaggtgaacaacttgcagttagcactggccaggatccaggtacttggc
catcgggccagcagggccatcgccagttacatcagcagccactgccgattccgctggccc
aaggtggagacccagctgggcatgaagcccccactcaccagctcagaggccaagaaccac
attgccactgatgctgtcagtgctgcagtggggaacctgacaaagccagctctcagtagc
cccaaggagaaccacggggacttcatcactgatcccaacgtgtgggtctctgtgcccatt
gctgagggggaatctgacctcgacgagctcgaggaagatatggagcaggcttcgcagagc
tcctggcaggaagaggaccccaagggacagcaggagcagttgccacaagtccaaaagtgt
gaaaaccaccaggcagccagaagcccagcctccatgatgtcctctgaggacctggctcca
tacctgggtgagagctggaagaggaaggatagccctcaggtccctgccgagggagtggat
gacacgagctcctctgagggcagcacggtggactgcccggacccagaggaaatcctgagg
aagatccccgagctggcagatgacctggacgagcccgatgactgtttcacagaaggctgc
actcgccgctgtccctgctgcaacgtgaatactagcaagtctccttgggccacaggctgg
caggtgcgcaagacctgctaccgcatcgtggagcacagctggtttgagagtttcatcatc
ttcatgatcctgctcagcagtggagcgctggcctttgaggataactacctggaagagaaa
ccccgagtgaagtccgtgctggagtacactgaccgagtgttcaccttcatcttcgtcttt
gagatgctgctcaagtgggtagcctatggcttcaaaaagtatttcaccaatgcctggtgc
tggctggacttcctcattgtgaacatctccctgacaagcctcatagcgaagatccttgag
tattccgacgtggcgtccatcaaagcccttcggactctccgtgccctccgaccgctgcgg
gctctgtctcgattcgaaggcatgagggtagtggtggatgccctcgtgggcgccatcccc
tccatcatgaacgtcctcctcgtctgcctcatcttctggctcatcttcagcatcatgggc
gtgaacctcttcgccgggaaattttcgaagtgcgtcgacaccagaaataacccattttcc
aacgtgaattcgacgatggtgaataacaagtccgagtgtcacaatcaaaacagcaccggc
cacttcttctgggtcaacgtcaaagtcaacttcgacaacgtcgctatgggctacctcgca
cttcttcaggtggcaaccttcaaaggctggatggacataatgtatgcagctgttgattcc
ggagagatcaacagtcagcctaactgggagaacaacttgtacatgtacctgtacttcgtc
gttttcatcattttcggtggcttcttcacgctgaatctctttgttggggtcataatcgac
aacttcaaccaacagaaaaaaaagctaggaggccaggacatcttcatgacagaagagcag
aagaagtactacaatgccatgaagaagctgggctccaagaaaccccagaagcccatccca
cggcccctgaataagtaccaaggcttcgtgtttgacatcgtgaccaggcaagcctttgac
atcatcatcatggttctcatctgcctcaacatgatcaccatgatggtggagaccgacgag
cagggcgaggagaagacgaaggttctgggcagaatcaaccagttctttgtggccgtcttc
acgggcgagtgtgtgatgaagatgttcgccctgcgacagtactacttcaccaacggctgg
aacgtgttcgacttcatagtggtgatcctgtccattgggagtctgctgttttctgcaatc
cttaagtcactggaaaactacttctccccgacgctcttccgagtcatccgtctggccagg
atcggccgcatcctcaggctgatccgagcagccaaggggattcgcacgctgctcttcgcc
ctcatgatgtccctgcccgccctcttcaacatcggcctcctcctcttcctcgtcatgttc
atctactccatcttcggcatggccagcttcgctaacgtcgtggacgaggccggcatcgac
gacatgttcaacttcaagacctttggcaacagcatgctgtgcctgttccagatcaccacc
tcggccggctgggacggcctcctcagccccatcctcaacacggggcctccctactgcgac
cccaacctgcccaacagcaacggctcccgggggaactgcgggagcccggcggtgggcatc
atcttcttcaccacctacatcatcatctctttcctcatcgtggtcaacatgtacatcgca
gtgattctggagaacttcaacgtggccaccgaggagagcacggagcccctgagcgaggac
gacttcgacatgttctatgagacctgggagaagttcgacccggaggccacccagttcatt
gccttttctgccctctcagacttcgcggacacgctctccggccctcttagaatccccaaa
cccaaccagaatatattaatccagatggacctgccgttggtccccggggataagatccac
tgtctggacatcctttttgccttcacaaagaacgtcttgggagaatccggggagttggac
tccctgaagaccaatatggaagagaagtttatggcgaccaatctctccaaagcatcctat
gaaccaatagccaccaccctccggtggaagcaggaagacctctcagccacagtcattcaa
aaggcctaccggagctacatgctgcaccgctccttgacactctccaacaccctgcatgtg
cccagggctgaggaggatggcgtgtcacttcccggggaaggctatgttacattcatggca
aacagtggactcccggacaaatcagaaactgcctctgctacgtctttcccgccatcctat
gacagtgtcaccaggggtctgagtgaccgggccaacattaacccatctagctcaatgcaa
aatgaagatgaggtcgctgctaaggaaggaaacagccctggacctcagtga
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integrated database retrieval system