Rattus norvegicus (rat): 301042
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Entry
301042 CDS
T01003
Symbol
Trim71
Name
(RefSeq) E3 ubiquitin-protein ligase TRIM71
KO
K12035
tripartite motif-containing protein 71 [EC:
2.3.2.27
]
Organism
rno
Rattus norvegicus (rat)
Pathway
rno05206
MicroRNAs in cancer
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09160 Human Diseases
09161 Cancer: overview
05206 MicroRNAs in cancer
301042 (Trim71)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
301042 (Trim71)
04121 Ubiquitin system [BR:
rno04121
]
301042 (Trim71)
Enzymes [BR:
rno01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
301042 (Trim71)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
301042 (Trim71)
Ubiquitin system [BR:
rno04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
301042 (Trim71)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NHL
Filamin
DUF5128
zf-B_box
SGL
zf-C3HC4
zf-RING_5
zf-RING_UBOX
COG5_N
Motif
Other DBs
NCBI-GeneID:
301042
NCBI-ProteinID:
NP_001178730
RGD:
1566388
Ensembl:
ENSRNOG00000030098
UniProt:
D3ZVM4
LinkDB
All DBs
Position
8:complement(123076499..123129016)
Genome browser
AA seq
855 aa
AA seq
DB search
MASFPETDFQICLLCKEMCGSPAPLSSSSSASSSSSQTSTSSAGGGGPGAAARRLHVLPC
LHAFCRPCLEAHRLPAPGGAGPAEALKLRCPVCDQKVVLAEAAGMDALPSSAFLLSNLLD
AVVATADEPPPKNGRAGGGPGGAGGHSNHRHHAHHPAQRAAAPAPQPPPGPAASPGSLLL
RRPHGCSSCDEGNAASSRCLDCQEHLCDNCVRAHQRVRLTKDHYIERGPPGPAAASAAQQ
LGLGPPFAGAPFSILSVFPERLGFCQHHDDEVLHLYCDTCSVPICRECTLGRHGGHSFAY
LQDALQDSRALTIQLLADAQQGRQAIQLSIEQAQTVAEQVEMKAKVVQSEVKAVTARHKK
ALEERECELLWKVEKIRQVKAKSLYLQVEKLRQNLNKLESTISAVQQVLEEGRALDILLA
RDRMLAQVQELKTIRGLLQPQEDDRVMFTPPDQALYLALKSFGFVSSGAFAPLTKAAGDG
IKRALQGKVASFTVMGYDHNGEPRLSGGDLMSVVVLGPDGNLFGAEVSDQQNGTYVVSYR
PQLEGEHLVSVTLYNQHIENSPFKVVVKSGRSYVGIGLPVLSFGSEGDGEGKLCRPWGVS
VDKEGYIIVADRSNNRIQVFKPCGSFHHKFGTLGSRPGQFDRPAGVACDASRRIVVADKD
NHRIQIFTFEGQFLLKFGEKGTKNGQFNYPWDVAVNSEGKILVSDTRNHRIQLFGPDGVF
LNKYGFEGSLWKHFDSPRGVAFNHEGHLVVTDFNNHRLLVIHPDCQSARFLGSEGTGNGQ
FLRPQGVAVDQEGRIIVADSRNHRVQMFEANGSFLCKFGAQGSGFGQMDRPSGIAVTPEG
LIVVVDFGNNRILIF
NT seq
2568 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgttccctgagaccgacttccagatctgcctgctgtgcaaggagatgtgcggc
tcgcccgcgcctctctcctccagctcgtccgcctcttcatcgtcctcgcagacgtccacg
tcgtcggcgggcggcggcggccccggggcggcggcgcggcgcctgcacgtcctgccctgc
ctgcacgccttctgccggccgtgcctcgaggcgcaccggctcccggctcccggtggcgcc
ggccccgccgaggcgctgaagctgcgctgtcctgtgtgtgaccagaaggtggtcctggcc
gaggcggcaggcatggacgcgctgccgtcgtccgccttcctgctcagcaacctgctggac
gccgtggtggccaccgccgacgagccgccgcccaagaacgggcgcgcgggtggcggcccc
gggggcgcgggcggccacagcaatcaccggcaccacgcgcaccacccggcccagcgcgcc
gccgctccagcgccgcagccgccgcccggcccggccgcttctccagggtcgctgttgttg
cgccggccgcacggctgcagctcctgcgacgagggcaatgctgcctcgtcgcgctgcctc
gactgccaggaacacctgtgcgacaactgtgtccgcgcgcaccagcgcgtacgcctcacc
aaggaccactacatcgagcgcggcccgccggggcctgcggccgcctccgcggcgcagcag
ctggggctcgggccgcccttcgcaggcgcgcccttctccatcctctcggtgttcccggag
cgcctcggcttctgccaacaccacgacgacgaggtactacatctgtactgcgacacctgc
tccgtgcccatctgcagagagtgcacactgggccgccatggcggccacagcttcgcctac
ctccaggacgccctacaggactcacgggcactcaccatccagctgctggccgacgcccag
cagggccgccaggccattcagctgagcattgagcaggcgcagactgtggcagaacaagtg
gagatgaaggccaaggtggtccagtcggaggtcaaggccgtcacggcgagacacaagaaa
gctctggaggagcgtgagtgcgagctgctgtggaaggtggagaagatccggcaggtgaag
gctaagtctctctacctgcaggtggagaagctgcggcagaatctcaacaagctggagagc
accatcagcgccgtccagcaggtcctagaagagggccgagccctggacatcctgctggcc
cgagaccggatgctggctcaggtgcaggagctcaagaccatccggggcctcctgcagccc
caggaagatgaccgagttatgttcacaccccccgaccaggccctgtaccttgccctcaag
tcttttggctttgtcagcagtggggcctttgccccactcacgaaggccgcgggagatggc
atcaagcgagcccttcagggaaaggtggcctccttcactgtcatgggctatgaccacaat
ggtgagccccgcctctcaggaggtgacctgatgtcggtggtggtccttggccctgatgga
aacctgtttggtgcagaagtgagcgaccagcagaatgggacctacgtcgtgagctacagg
ccccagcttgagggtgaacacttggtatcagtgacgctgtataaccagcacatcgagaac
agccccttcaaggtagtggtcaagtcgggccgcagctatgtgggcatcgggctcccagtg
ttgagctttggcagcgagggtgatggcgagggtaagctctgcaggccctggggcgtgagt
gtggataaggagggctacatcatcgtggctgaccgcagcaataacagaattcaggtgttt
aagccctgtgggtctttccaccacaagtttggtaccctaggatctcggcccgggcagttt
gaccgaccggcgggggtggcctgcgacgcctcccgcaggatcgtggtggccgacaaagac
aatcatcgcatccagatcttcaccttcgagggccagttccttctgaagtttggcgagaaa
ggaaccaagaatgggcagtttaactacccgtgggatgtagcggtcaactctgagggcaag
atcctggtttcagacacccgaaaccaccgcatccagctgttcggacccgacggcgtcttc
ctgaataagtatggcttcgagggatctctctggaagcacttcgactccccacggggcgtg
gctttcaaccatgaaggtcacctggtagtcactgatttcaacaaccatcggctcctggtt
atccaccccgattgccagtctgcccgcttcctgggctctgagggcactggcaatgggcag
ttcctgcgaccacagggtgtggctgtagaccaggaagggcgaatcattgtcgccgattcc
agaaatcaccgtgtgcagatgtttgaggccaacggcagcttcctgtgcaagttcggtgct
caaggcagcggcttcgggcagatggaccgcccctcaggtatcgcggtcaccccggaagga
ttgatcgtcgtggtggactttggcaacaatcgaatcctcatcttctaa
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