Rattus norvegicus (rat): 361176
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Entry
361176 CDS
T01003
Symbol
Upf3a
Name
(RefSeq) regulator of nonsense transcripts 3A
KO
K14328
regulator of nonsense transcripts 3
Organism
rno
Rattus norvegicus (rat)
Pathway
rno03013
Nucleocytoplasmic transport
rno03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rno00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
361176 (Upf3a)
03015 mRNA surveillance pathway
361176 (Upf3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rno03019
]
361176 (Upf3a)
Messenger RNA biogenesis [BR:
rno03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
361176 (Upf3a)
mRNA cycle factors
P-body specific factors
361176 (Upf3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
361176
NCBI-ProteinID:
NP_001012159
RGD:
1308778
Ensembl:
ENSRNOG00000017397
Vega:
OTTRNOG00000001994
UniProt:
Q5I0C8
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All DBs
Position
16:complement(82459651..82470686)
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AA seq
405 aa
AA seq
DB search
MRSEEGAGGLGAVLSARGPSWREKLSGAETHFRRESTRNESAAPPAPALSESGVGKPREE
KRTALSKVVLRRLPPGLTKEQLEEQLRPLPAHDYFEVVAADLSLYPHLYSRAYINFRNPD
DILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIAKKKVKKKDAKTGSIEDDPEYKQFLE
SYSLEEEKTSASPETLLGEIEAKTRELLARRTTPLLEYIKNRKLEKQRLREEKREERRRR
ELEKKRLREEEKRKRREEDRCKRKDAEKQKRAEKDVRIKLLKKLETGEEATTEKHKERGE
AVGAGEEKQEARLVESQPETPGERLQDGSDKEPRDKRFREKEPETPRCHDSCRKHSTHSE
FARFSRRSEEEPKWRKGFTQDGGERGQDGGVPADGRAKQQGAQGV
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcggaagagggggccggaggcctgggcgcagtcctttctgcgcggggcccgagc
tggagggagaaactgtccggagcagagacccatttccgccgcgagtctacgcggaatgag
tcggcggcgcccccggccccggccttaagtgagagcggggtcggcaagcctcgcgaggag
aagaggacggccctgagcaaggttgtcctccggcgtctgcccccgggcctcaccaaagag
cagctggaagagcaactgcgtcctctacccgcgcacgattacttcgaggtggtggctgcg
gacctcagcctctaccctcacctctactccagagcgtacattaattttaggaaccctgat
gacatcctgctgttcagagaccgttttgatggatacatcttcattggcaataaaggcctg
gagtaccctgcagtggtggagtttgctccattccagaagattgccaaaaagaaggtgaag
aaaaaggatgccaagaccggaagcatcgaagacgacccagagtataaacagttcctggag
tcgtacagcttggaggaagaaaagaccagcgctagtcctgagacactgctgggagagata
gaggcgaagacgagagagttgctggccagaagaaccacacctcttttggaatatattaaa
aacagaaaattagaaaagcagagactccgggaagaaaaacgcgaggagcggaggaggagg
gagctggagaagaagcgtctgcgggaggaagagaagaggaagcggagagaagaggacagg
tgtaaaaggaaagatgcagaaaaacagaagcgagcggagaaggacgtgaggatcaagctt
cttaagaaactggaaacgggagaagaagcgaccactgagaaacacaaagaaagaggtgaa
gccgttggtgctggcgaggagaagcaggaagcccggctggtggagagccagccggagaca
cctggggagaggttacaggacggcagtgataaagaaccaagggacaaaagatttcgagag
aaagagcctgagactccgagatgccatgacagttgcagaaagcacagcactcactcagag
tttgccaggttttccagaaggagcgaggaggagccaaagtggaggaaaggcttcacccag
gacggaggggagaggggccaggacgggggcgtccctgcggatggcagagcaaagcagcaa
ggagcacaaggagtatga
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integrated database retrieval system