Rhodococcus opacus PD630: Pd630_LPD01566
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Entry
Pd630_LPD01566 CDS
T03071
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
roa
Rhodococcus opacus PD630
Pathway
roa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Pd630_LPD01566
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roa03400
]
Pd630_LPD01566
Enzymes [BR:
roa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Pd630_LPD01566
DNA repair and recombination proteins [BR:
roa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Pd630_LPD01566
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AHK28795
LinkDB
All DBs
Position
1602638..1604917
Genome browser
AA seq
759 aa
AA seq
DB search
MATAGTRQLTVDGHRLSLTNLGKVLYPESETTKGEVIDYYTRIAPAMLPHVVDRPATRKR
WPNGVDSEPFFEKNLAASAPAWLERRAIEHSDRSVHYPLLNSVAALAWAGQQAALELHVP
QWRFDGPHRGPATRIVFDLDPGPGVGLTECAEVARAVRDLVANLGWTAYPVTSGSKGIHL
YVPLDRKLDGSGASTVAKQVATGLEKLRPELVTATMAKAVRAGKVFVDWSQNNPSKTTIA
PYSLRGRSQPYVAAPRSWDELDDPDLRQLRFEEVLERWESDGDLLAGLDPPIEDAAALAE
YRRKRDPGRTPEPMPDTVQPGEGNSFVIQEHHARRLHYDLRLERDGVLVSWAVPKNVPTT
TGENRLAVHTEDHPLEYLTFSGSIPKGEYGGGEMTIWDTGTYDTEKWRDDEVIVQLHGEQ
VEGRFALIRTKGDQWLMHLMKDQTPGGTHTSELPRGLSPMLASPGTLDGLNADEWAFEGK
WDGIRVIAEISGGELRLTSRAGNDKTRDYARLGWLADSLGDHEVVLDGEVVSFDERGVAN
FGLLQQGNEPHFLAFDVLYLDGVSLLRKKYTDRRRVLEALAAKVDDLVVPPQLHGSAQEA
LDESRGKGWEGVVAKRRESVYLPGKRGSSWIKVKNWRTQEAVIGGWRRGQGGRSTGIGSV
LLGVPEDGGLRYIGRVGTGFTERDLQELASTLGPLETDTSPFVEDLPTADRKGAVWVTPT
LVAEVRFMDWTGSKRLRHPSWRGLRDDKAPEDVEEEVSS
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
gtggccacggcgggaactcggcaactgacggtcgacggacatcgcctgtccctgaccaat
ctcggcaaggtcctctacccggaatcggaaacgacgaagggcgaggtcatcgactactac
acgcggatcgcgcccgccatgctcccgcacgtcgtcgatcgccccgccacccgtaaacgc
tggcccaacggggtggacagcgagccgttcttcgagaagaacctcgcggcctccgcaccg
gcgtggttggagcgccgcgcgatcgagcactcggatcggtcggtgcactatccgctcctg
aactcggtcgcggcgcttgcgtgggcgggacagcaggccgcactcgaactgcacgttccg
cagtggcggttcgacggcccgcatcgggggcccgccacccggatcgtcttcgacctcgac
cccggtcccggtgtgggcctgaccgaatgcgcggaggtggcacgggccgtgcgcgacctg
gtcgcgaacctcggctggaccgcgtacccggtcaccagcggcagcaagggtattcacctg
tacgtgccgctcgaccggaagctggacggttcgggcgcgtccaccgtcgcgaaacaggtg
gcgacgggactcgagaagctgcggcccgaactcgtcaccgccaccatggccaaggcggtg
cgcgcgggaaaggtgttcgtcgactggagccagaacaatccgtccaagaccaccatcgca
ccgtattcgctgcggggacgctcccagccgtatgtcgcggcgccgcggagctgggacgaa
ctcgacgaccccgacctacgacagctgcggttcgaggaagtgctcgaacggtgggagtcg
gacggcgacctgctcgccggactcgacccgccgatcgaggacgccgccgccctcgccgag
taccgccgcaagcgtgatcccggacggacacccgagccgatgccggacacggtgcagccg
ggggaggggaacagtttcgtcatccaggaacaccacgcccggcgcctccactacgacctg
cggctcgaacgcgacggggtgctcgtgtcgtgggcggtgcccaagaacgtgccgacgacg
acgggggagaaccggctcgccgtgcacaccgaggatcacccgctcgagtacctgaccttc
tcgggatccatcccgaagggcgagtacggcggcggcgagatgaccatctgggacacggga
acgtacgacaccgagaagtggcgcgacgacgaggtgatcgtccagttgcacggcgagcag
gtggagggccggttcgcgctgatccgcacgaagggcgaccagtggctgatgcatctgatg
aaggaccagacaccgggtgggacgcacacgtccgaactgccccgcggactgtcgccgatg
ctcgcgagccccggcaccctcgacggactcaacgccgacgagtgggctttcgaaggaaag
tgggacgggatcagggtgatcgccgagatcagtggcggcgagctgaggctgacgagccgg
gcgggtaacgacaagacacgcgactatgcgcgattgggttggctggcagactctctcggt
gaccacgaggtggtcctcgacggtgaagtcgtctcgttcgacgagcggggtgtcgcgaac
ttcggcctgctgcagcagggcaacgagccgcacttcctcgcgttcgacgtgctgtatctc
gacggagtgtcgttgttacgcaagaagtacaccgaccggcgccgcgtcctcgaagcgctg
gcggccaaggtggacgacctggtcgttccgccgcaactgcacgggtccgcgcaggaggct
ctggacgagagtcgcggcaagggctgggaaggtgtcgtggccaaacgccgcgaatccgtg
tacctgccgggcaagcgggggtcgagctggatcaaggtgaagaactggcgcacccaggaa
gccgtgatcggcgggtggcgtcggggtcagggcgggagatccacgggaatcgggtcggta
ctgctcggcgtccccgaggacggtgggctgcgctacatcgggcgcgtcggaaccggtttc
accgaacgggatctgcaggaactcgcatccactctgggaccgctcgaaaccgacaccagc
ccgttcgtcgaagacctgcccaccgcagaccgcaagggggccgtgtgggtgacccccaca
ctggtcgcggaggtgcggttcatggattggaccggctcgaagagattgcggcaccccagc
tggcgtggcctcagggacgacaaggcacccgaggacgtcgaagaggaggtctcgtcatga
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