Rhodococcus opacus PD630: Pd630_LPD02376
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Entry
Pd630_LPD02376 CDS
T03071
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
roa
Rhodococcus opacus PD630
Pathway
roa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
roa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Pd630_LPD02376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roa03400
]
Pd630_LPD02376
Enzymes [BR:
roa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Pd630_LPD02376
DNA repair and recombination proteins [BR:
roa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Pd630_LPD02376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
DUF3638
IstB_IS21
UB2H
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AHK29600
LinkDB
All DBs
Position
2519116..2522838
Genome browser
AA seq
1240 aa
AA seq
DB search
MSSPLIAAEPSSDTPLAGLAKIALGDAVIAQVTEALGRHHLDIVAPAPARPFVAAALAER
THLLLVTATGREADDLTAELQEMIGDAVAQFPSWETLPHERLSPSADTVGRRVEVLRRLA
RPDDRSYGAPLQVIVTTVRSLVQPMAPGLGEIEPVTLRVGVEHDFDGLIQRLVEMAYTRV
DMVGKRGEFAVRGGILDLFSPTADHPVRVEFWGDEVTELRAFSVADQRSLPELDIDAVIA
PPCRELLLTEDVRDRAAQLAVDNQADAALVEMLDKMSAGIPVEGMEALLPVLRPGQLQLL
TDVLPESAHVLLCDPEKIRTRATDLVRTGQEFLEASWTAASIGGAVPLDTSVLKGDGIDL
GASAYRSLSQVRESAETTGLPWWTLSPLASGNGEELELAVTPAPQVRGSDDLLSELFVSL
RAHVTTGGRAVIVVAGAGTAHRVLERLREAEVPAAELAPGTEPPRGQVGVLRGSLHDGLV
FPGDASTAGLVIVTEADLTGNRVAAVGDGKRLPAKRRNQVDPLALTAGDMVVHDQHGIGR
FVEMVERTIGGARREYLVIEYAASKRGHPGDRLFVPMESLDQLSRYVGGELPALSKLGGS
DWANTKRKARKAVREIAGELVQLYAARQAAPGHAFGPDTPWQKEMEDAFAFTETHDQLTV
ISEVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQT
FTERMAAFPVTVRGLSRFTDAGDSKEIIAGMADGEIDVVVGTHRLLQTGIRWKDLGLVIV
DEEQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILT
YVGAYADKQVAAAIRRELLRDGQVFYVHNRVSSIDKSAQRIRDLVPEARVVVAHGQMNED
TLERTVQGFWERDYDVLVCTTIIETGLDISNANTLIVERADSLGLSQLHQLRGRVGRSRE
RGYAYFLYPPEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVA
GVGFDPLRAAGGGGGRGVPGGRRRQADHDGGRPEGGPYRPARRRAHPSRLRHQRPSPARG
IPQARGGHRTRRHHGRGRRTRRPVRTAPRGGPPTGFGGQAAPAGPRVRTRGNRRGRDAAE
DRADGPARLEAVASQADLPERAVPCHHRDGAAAAAPGRFRRNRRGAGAGRGVAAVHRRFR
ARAGRQGCRVRGDGGLTDDGGPARPVAAHDDPDAGGRGGR
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
ttgtcttccccgctcatcgctgccgagccctcgtccgacaccccgctcgccggtctggcg
aagatcgcgctgggcgacgcagtcatcgcgcaggtgaccgaggcgctcgggcggcatcac
ctcgacatcgtcgcgcccgcacccgcccggccgttcgtggccgcggctctcgccgagcgc
acccatctgctgctggtcaccgcgaccggtcgcgaggccgacgacctgaccgccgaactg
caggagatgatcggcgacgccgttgcgcagttcccgtcgtgggagacgctgccgcacgaa
cggctgtcgccgagcgccgacacggtcggtcgccgcgtggaggtgctccgcagactcgcg
cgcccggacgaccgctcgtacggggccccgctccaggtcatcgtcaccaccgtccgttcg
ctggtgcaacccatggcccccggtctcggtgagatcgaaccggtaacgctgcgcgtgggt
gtcgagcacgacttcgacgggctgatccagcggctcgtcgaaatggcgtacacgcgcgtc
gacatggtgggcaagcgcggcgagttcgccgtccgcggcggcatcctggacctgttctca
cccaccgcggatcatcccgtgcgcgtcgaattctggggcgacgaggtcaccgagttgcgc
gcgttctccgtcgcggatcagaggtcgctgcccgaactcgacatcgacgccgtcatcgcc
ccgccgtgccgcgaactgctcctcaccgaggacgtccgcgaccgcgccgcgcagctcgcg
gtcgacaaccaggccgacgccgcgctcgtcgagatgctcgacaagatgtcggccggcatc
ccggtggagggcatggaggcactgctgcccgtgctgcggccggggcaactccagttgctc
accgacgtgctgcccgagagcgcacacgtgctgctgtgcgatccggagaagatccggacg
cgcgccaccgacctggtgcgcaccggtcaggagttcctcgaggcgtcgtggacggcggcc
tcgatcggcggcgccgtcccgctcgacacctcggtgctgaagggcgacggcatcgacctc
ggcgcctccgcctaccgctcgctcagtcaggtccgggaatccgcggagaccacgggtctg
ccgtggtggacgctgagcccgctcgcgtccggcaacggcgaggaactggagctggcggtc
acgccggcaccccaggtccgcggttccgacgacctgctgtcggaactgttcgtgagcctg
cgcgcccacgtcaccaccggcgggcgggccgtcatcgtggtcgcgggcgccggcaccgcg
catcgcgtgctcgagcgtcttcgcgaggccgaggtacccgcggcggaactcgcgcccggt
accgagcccccgcggggccaggtcggggtgctccgcggttcgctccacgacggcctggtc
ttccccggcgacgcctccaccgccggactcgtcatcgtcacggaggccgacctcaccggc
aaccgggtggccgcggtcggcgacggcaagaggctgccggcgaagcgccgcaaccaggtg
gacccgctcgctctgaccgccggggacatggtggtgcacgaccagcacggcatcggacga
ttcgtcgagatggtcgaacgcaccatcggcggcgcgcggcgcgagtacctcgtgatcgag
tacgccgccagcaagcgcggacacccgggcgaccgtctgttcgtcccgatggagtcgctc
gaccagctgtcgcggtacgtcggcggcgagctgcccgcgctgagcaagctcggcggttcc
gactgggccaacaccaaacgcaaggcgcgcaaggcggttcgtgagatcgccggtgaactc
gtccagctgtacgcggcgcggcaggccgcacccggtcatgcgttcggcccggacaccccg
tggcagaaggagatggaggacgccttcgcgttcaccgagacccacgaccagctgacggtc
atcagcgaggtcaaggccgacatggagaaggcggtcccgatggaccgcgtcgtcatcggc
gacgtcggctacggcaagaccgagatcgcggtgcgggcggcgttcaaggccgtgcaggac
ggcaagcaggtggcggtcctggtgccgacgaccctcctcgctcagcagcacctgcagacg
ttcaccgagcgcatggcggcgttcccggtgacggtgcgcgggctctcccgcttcacggat
gcgggggactccaaggagatcatcgccggcatggcggacggcgagatcgacgtcgtggtc
ggcacgcaccggctgctgcagaccgggatccggtggaaggacctgggcctcgtcatcgtc
gacgaggaacagcgcttcggtgtggaacacaaggagcacatcaaggcgctgcgcacccac
gtggacgttctcacgatgtcggccacgccgatcccgcgaacgctggagatgagcatggcg
ggcatccgcgagatgtccacgatcctcacaccgccggaggagcggcaccccatcctcacc
tatgtcggcgcgtacgccgacaagcaggtcgccgcggccatccgacgggaactgctccgc
gacgggcaggtgttctacgtccacaaccgggtcagctcgatcgacaagtcggcccagcgt
atccgcgacctcgtccccgaggcgcgggtcgtggtggcgcacggccagatgaacgaggac
acgctcgagcggaccgtgcagggcttctgggaacgcgactacgacgtgctggtgtgcacc
accatcatcgagacgggtctcgacatctccaacgccaacacgctcatcgtcgaacgcgcc
gattccctcggcctgtcgcagctgcaccagttgcgcggtcgcgtcgggcgtagccgggaa
cgcggctacgcgtacttcctgtacccgccggagaagccgctcacggagacggcctacgac
cgcctcgcgaccatttcgcagaactccgacctcggtgccggcatggcggtcgcgatgaag
gacctcgagatccgcggcgccggaaacgtgctgggcgccgagcagtccggtcacgtcgcg
ggtgtcgggttcgatcctctacgtgcggctggtgggggaggcggtcgaggcgttccgggc
ggccgccgacggcaagccgatcacgacggaggacgccccgaaggaggtccgtatcgacct
gcccgtcgacgcgcacatccctcccgattacgtcaccagcgaccgtctccggctcgaggg
ataccgcaagctcgcggcggccaccgaactcgacggcatcacggccgtggtcgacgaact
cgtcgaccggtacggaccgctccccgaggaggtccgccgactggtttcggtggccaagct
gcgcctgctggcccgcgagtacggactcgaggaaatcgccgtggtcgggacgcagctgaa
gatcgcgccgatggccctgcccgactcgaagcagttgcgtctcaagcggatctacccgag
cgcgcagtaccgtgccaccaccgggatggtgcagctgccgctgccccgggcaggttccgg
cggaatcggcgcggagcgggtgcgggacgtggagttgctgcagtacatcgccgatttcgt
gctcgcgctggacggcaaggctgccgggtccgtggtgatggaggcctgaccgatgacggt
ggtcctgctcgacccgttgcggcccacgacgatcccgatgcaggcggtcggggtggtcgg
tga
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integrated database retrieval system
