Roseovarius faecimaris: EI983_09605
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Entry
EI983_09605 CDS
T06338
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rom
Roseovarius faecimaris
Pathway
rom03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rom00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EI983_09605 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rom03400
]
EI983_09605 (mfd)
Enzymes [BR:
rom01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EI983_09605 (mfd)
DNA repair and recombination proteins [BR:
rom03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
EI983_09605 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
MFD_D3
AAA_16
AAA_30
SecA_DEAD
UB2H
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QGX98519
UniProt:
A0A6I6INA1
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All DBs
Position
complement(1871393..1874857)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSKVQHITVSGAPEGFDARLLLQEVDKQGGPVIHVARDDKRMAAMEEALRFFAPDMPVIR
FPGWDCLPYDRTSPNADISAARMATLAGLVHGMPGQFVLLTTLNAATQRVPAREVLREAA
FTARVDYQIDEAALRAFLARMGFSQAPTVMEPGDYAVRGGIIDIYPPGDGGPVRLDLFGD
VLDGVRRFDPATQRTTEKLDRIELSPVSEVILDEAAIRRFRQNYRIEFGAGGGEDPLYEA
VSAGRKHHGVEHWLPFFHETLETLFDYLPGVTVSLDDQVTAARLSRWDMVRDQYEARQHA
MSQKGRTDTVYKPIAPELLYLDDDAWEAALGARRVMQLVPLPQATGPGVIDAGGRIGRDF
APERQQENISLFGALKDHVQARMTEGPVLLASYSEGARERMEGLLEDEGLIGAVTVRNAG
GIGRHGLHLAVWPLEHGFTSPDLTVIAEQDILGDRLIRSPKRKRRAENFLSEVQSLSPGD
LVVHVDHGIGRYHGLEVITAAGAAHECLKLEYAESSTLYLPVENIELLSRYGHEEGLLDR
LGGGAWQSKKAKLKERIREMADRLIRIAAERALRKAPVLEPEHHAWEEFAARFPYSETDD
QLKAIEDVLTDLESGTPMDRLICGDVGFGKTEVAMRAAFVAAMQGMQVAVIAPTTLLARQ
HYQSFAERFRGFPVTVRPLSRFVTASEASKTREGMAKGEVDIVVGTHALLAKNIRFKNLG
LLVIDEEQRFGVGHKERLKQLRSDVHVLTLTATPIPRTLQLSLSGVRDLSIIGTPPVDRL
SIRTYVSEFDSVTIREALLREHYRGGQSFYVVPRIKDLPEIEEFLKTQVPEVSTVVAHGQ
MAARELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMVIHRADMFGLAQLYQIRGRVG
RSKQRAYAYLTTKPRVPLTPSAEKRLRVLGSLDTLGAGFTLASQDLDIRGAGNLLGEEQS
GQMRDVGYELYQSMLEEAIAKIKAGELEGLSEADDQWAPQINLGVPVLIPESYVPDLDVR
LGLYRRLSGLQSKVELEGFAAELIDRFGKLPREVNMLMLIVRIKAMCKKAGIAKLDGGPK
GATIQFHNDKFASPQGLVEFIQDQRGLAKVRDNKIVVRRDWNKEADKIKGAFAIARDLAE
KVVAEKKRKAGKAG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaggtccagcatatcaccgtcagcggcgcgcccgaggggttcgatgcgcgcctg
ttgctgcaggaggtggacaagcagggtggcccggtcatccatgtcgcccgcgatgacaag
cgcatggccgcgatggaagaggcgctgcggtttttcgcgcccgatatgccggtgatccgc
tttccgggctgggattgcctgccctatgaccggacctcgcccaatgcggacatttcggcg
gcgcggatggccacgctggccgggctggtgcacgggatgccggggcagtttgtcctgctg
accacgctgaatgcggcgacgcaaagggtgcctgcgcgcgaggtgctgcgcgaggcggcc
tttaccgcgcgggtcgattatcagatcgacgaggcggcgctgcgcgcgtttctggcgcgg
atggggttcagccaggcgcccacggtgatggagccgggcgattacgcggtgcgcggcggg
atcatcgacatttatccgccgggcgacggcgggccggtgcggctggatctgtttggcgat
gtgctcgatggggtgcgccggttcgacccggcgacgcagcggaccacggaaaagctggac
cggatcgagctgtcgccggtcagcgaggtgatcctggatgaggccgcgatccgccggttc
cggcagaattaccggatcgaatttggcgcgggcgggggagaggatccgctctatgaggcg
gtcagcgcggggcgcaagcatcatggcgtggaacattggctgccgtttttccatgagacg
ctggagacgctgtttgactacctgcccggcgtgacggtcagccttgacgatcaggtgacg
gcggcgcggctgagccggtgggacatggtgcgcgatcagtatgaggcgcgccagcacgcg
atgagccagaaggggcgcacggacacggtttacaaacccatagctccggagcttttgtat
ctggacgatgacgcgtgggaggccgccctgggcgcgcggcgggtgatgcagcttgtgccg
ctgccgcaggccaccggccccggtgtgatcgacgcgggcgggcgcatcgggcgcgatttc
gcaccggagcggcaacaggaaaacatcagccttttcggggccttgaaggatcatgttcag
gcgcgcatgaccgaggggccagtgttgctggcctcctattctgaaggcgcgcgggagcgg
atggagggccttctggaagatgagggcctgatcggggcggtgacggtgcgcaacgcgggc
ggtatcgggcggcacgggctgcatctggcggtgtggccgctggagcatggctttacctcg
cctgacctcacggtgattgccgagcaggatattctgggcgaccgcctgatccggtccccc
aagcgcaaacgccgggccgagaatttcctgagcgaggtgcaatcgctcagtccaggcgat
ctggtggtgcatgtggatcacgggatcgggcggtatcacgggctggaggtgatcacggcg
gcgggtgctgcgcatgagtgcctgaagctggaatatgccgaaagctcaacgctttacctt
ccggtggagaatatcgaactcttgagccgttatggccatgaggaagggttgctcgaccgg
ctcggcgggggtgcatggcagtcgaagaaggccaagctcaaggaacgtatccgcgagatg
gcggaccggctgatccggattgcggccgagcgcgcgctgcgcaaagcccccgtgctggag
cccgagcaccacgcctgggaggagttcgcggcgcgctttccctattcggagacggatgat
cagctcaaggcgatcgaggatgtgctgaccgatctggaaagcggcacgccgatggaccgg
ctgatctgcggcgatgtgggttttggcaagaccgaagtggccatgcgcgcggccttcgtg
gcggcgatgcagggcatgcaggtggcggtgattgcgcccacgacgctgctggcgcggcag
cactatcagagttttgccgagcggtttcgcggctttcccgtcacggtgcggccgctgtcg
cgttttgtcacggcaagcgaggccagcaagacccgcgagggcatggccaagggtgaggtg
gatatcgttgtcggcacccatgcgctgctggcgaaaaacatccggttcaagaatctcggg
cttctggtgatcgatgaggagcagcgctttggcgtggggcataaggagcggctgaagcag
ctgcgctcggacgtgcatgtgctgaccctgacggcgacgcccattccgcgcaccttgcaa
ctgagcctgtcgggtgtgcgtgatctgagcattatcggcacgccgcccgtggaccggctt
tcgatccggacctatgtgagcgagtttgactctgtgacgatccgggaggcgctgctgcgc
gagcattatcgcggcgggcagagcttttacgtggtgccacggatcaaggatttgcccgag
atcgaggaattcctgaaaacgcaggtgccggaggtgagcactgtggtggcgcatggtcag
atggccgcgcgcgagctggatgaccggatgaatgcgttttacgacggcaaatacgacgtg
ttgcttgccacgacgattgtcgagagcgggctggacattccgaccgcgaacacaatggtc
attcatcgcgcggatatgtttggcctggcacagctctatcagatccgggggcgcgtcggg
cgctccaagcaacgggcgtatgcgtatctgacgaccaagccgcgcgtgccgctgacgccg
agcgcggaaaaacggctgcgcgttctgggcagcctcgatacgctgggcgcggggttcacg
ctggccagtcaggacctcgatattcgcggggcgggcaaccttctgggcgaagaacagtca
ggccagatgcgcgatgtggggtatgagctttaccagtcgatgctggaagaggcgattgcc
aagatcaaggcgggcgaactggagggccttagcgaggccgatgatcaatgggcgccgcag
atcaatctgggcgtgccggtgctgatccctgaatcttacgtgccggatctggatgtcagg
ctgggattgtaccgccgtctcagcgggttacagagcaaagttgaactggagggttttgcc
gccgagctgatcgaccggtttggcaagctgccgcgagaggtcaacatgctgatgctgatc
gtgcggatcaaggcgatgtgcaagaaggcggggattgccaagctggatggcgggccgaag
ggtgcgacgatccagtttcacaatgacaagtttgcctcgccgcaggggctggtggagttc
atccaggatcagcgcgggctggccaaggtgcgcgacaacaagatcgtcgtgcggcgcgac
tggaataaagaggcagacaagatcaagggcgcctttgccattgcccgcgatctggccgaa
aaggtcgtggccgagaagaagcgcaaggcgggcaaggcggggtag
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