Roseimicrobium sp. ORNL1: G5S37_21715
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Entry
G5S37_21715 CDS
T06460
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
roo
Roseimicrobium sp. ORNL1
Pathway
roo03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
roo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G5S37_21715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roo03400
]
G5S37_21715
Enzymes [BR:
roo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G5S37_21715
DNA repair and recombination proteins [BR:
roo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G5S37_21715
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
KASH_CCD
Motif
Other DBs
NCBI-ProteinID:
QIF04035
UniProt:
A0A6G6K9C2
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Position
complement(5387038..5388720)
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AA seq
560 aa
AA seq
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MASLKEYKRKRNFAITAEPEGRVEKSKGKLARFVIQKHDASRLHYDFRLEMGGTLVSWAV
PKGLPLAKGEKHLAVKVEDHPVSYIDFEGTIPKGQYGGGTVQVWDRGTYEPLSKAPKKEL
DGGKLHVVLKGKKLQGEWYLVRLKDEDEQWLIIKGGENHKKLSKKVESESALSGKTMAQL
AKSDHVWQSKPRNSGNGRGSLKERLAAARESAKTPKKAVPKSKTTAKAGKRKPALKAKFL
EPMKAHIENKVPPGDWLYEIKFDGFRAVTYKEGKTVHLLSRTNHDLAEKFPDVVEAMEGM
DVKNAIIDGEIVALDKDGRSSFQLLQAYELGQERPPLCYYVFDILALNGKSTRDLPLEER
REKLKAILPESSDIIRFSSSIGTDAEKLLKKAGALGLEGLIGKRKGSRYEVGQRSGAWVK
LKLVKEQEFVIGGYTPPGGTRQHIGALLVGVYEKGKLVYSGKVGTGYTGAVLKDLHTRFK
KMASDTCPFKDLPEEREGRYGQGITTSVMKKCHWLKPVLVCQVKFSEWTRDDRLRQPVYL
GLREDKKAKDVVREPSSKLA
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgctcaaggaatacaaacgcaagcggaacttcgccatcaccgccgagcctgag
ggccgtgtggagaagtcgaaaggcaagctggctcgcttcgttatccagaagcacgatgct
tcacggctgcactacgacttccgcctggagatgggcgggacacttgtttcctgggctgtg
cccaaaggcctgccgctggcgaagggagaaaagcatcttgccgtgaaggtggaggaccat
cccgtttcctacatcgacttcgagggcaccatcccgaagggacaatatggaggtggcacg
gtgcaggtgtgggaccgcggcacctacgagccgctgagcaaagcgccgaagaaggaactg
gatggtggcaagctccacgtcgtgctgaagggcaagaagctccagggagagtggtatctg
gtacggttgaaagacgaggacgagcaatggctcatcatcaaaggcggagagaatcacaag
aagctctcaaaaaaggtcgagtccgaatccgccctctccggcaagaccatggcccagctc
gccaagagcgatcacgtgtggcagtccaagccgcggaattccggcaatggccgtggctcg
ctgaaggagcgcctggccgcagcaagggagtccgcaaagacgccgaagaaggcggtgcca
aaatcgaaaaccactgcaaaggctggaaagcggaagcccgcattgaaggcgaaattcctc
gagcccatgaaagcgcacatcgagaacaaggtgccaccgggtgattggctttatgagata
aagttcgatggatttcgcgcggttacctacaaggagggcaagacggtgcacctactctcc
cggacgaatcatgatctcgcggaaaagttcccggacgtggtggaagccatggagggaatg
gacgtgaaaaatgccattatcgatggtgagatcgtcgcgctcgataaagatgggcgctct
tccttccagcttctccaggcatatgaactgggccaggagcgcccgccgctctgctactat
gtctttgatattctcgccctgaacggaaagagtacgcgcgacctcccactggaggaacgc
cgtgaaaagctcaaggccattttacccgagtcgtcggacatcatccgcttctcctcttcc
ataggcacggatgctgagaagctcctgaagaaggccggtgctctcgggcttgaggggctc
attgggaaacgcaagggatcgcgctatgaggtgggccagcgcagcggcgcctgggtcaaa
ctcaagctcgtgaaggagcaggagtttgtgattggcggctatacgccaccgggcggcacg
cgacagcacatcggagcactgctcgtgggcgtgtatgagaagggaaagctcgtgtactcc
ggcaaggtgggcacgggatacacgggagccgtgttgaaggatctgcacacgcgatttaag
aaaatggcctccgatacttgtcccttcaaggatctccccgaagagcgcgagggacgttac
ggtcagggcatcaccacaagtgtgatgaagaagtgccactggctgaaacccgtgctcgta
tgccaggtgaaattctccgagtggacgcgggacgatcgcctccgtcagccggtatacctg
ggactgcgtgaggacaagaaggccaaggacgtcgtgcgtgaaccctccagcaagcttgca
tga
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