Rhizobium oryzihabitans: G3A56_01205
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Entry
G3A56_01205 CDS
T06770
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
roy
Rhizobium oryzihabitans
Pathway
roy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
roy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
G3A56_01205 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roy03400
]
G3A56_01205 (mfd)
Enzymes [BR:
roy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
G3A56_01205 (mfd)
DNA repair and recombination proteins [BR:
roy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
G3A56_01205 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
RecG_dom3_C
UB2H
AAA_22
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QIB36783
UniProt:
A0A7L5BDI0
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All DBs
Position
M15-11:218318..221815
Genome browser
AA seq
1165 aa
AA seq
DB search
MIAGFDAKLVASADTPLTIGNVPSGMEALLLADMARAGTSVAYVMSDGQRVADLEQILGF
VAPDIPVLTLPAWDCLPYDRVSPSADTSARRLAALSGLISHAKKPHPAIVLVTVNAMLQK
MAPRDIIESLGFSAKPGNQIRMEDIAARLERNGFDRVATVREVGEFAVRGGILDVFVPGT
EEPVRLDFFGDTLESIRTFDPASQRTIGQARSLDLNPMSEVTLTPDTIGRFRKNYLSLFG
AATRDDALYQAVSEGRRYAGMEHWLPLFYEQLETAFDYLKGFRIVTDHTAREAAKERSKL
VLDYYEARRASGETKGSTQGAPYKPVSPGQIYLDGKSFEAALSAVNAVRLTPFNEHDTEG
RPVATLDAHVGPRWARPPTEGDSEERVNVFDLAVKHIAERRAKGWKVLITGWSEGSLDRL
LQVLNEHGLEKIKPVASLKEVDTLGKGEAASAVLSLEAGFETGTLAIIGEQDILGDRMVR
RSRRRKRGADFISEVAGLDEGSLVVHAEHGIGRFVGLQTIEAAGAPRACLELHYADDAKL
FLPVENIDLLSRYGSDAAEATLDRLGGGAWQMRKAKLKKRLLDMADELIRIAAARLVRHA
PVLAAPDGLYDEFAARFPYDETEDQLNAIEAVREDLGAGRPMDRLICGDVGFGKTEVALR
AAFLAAMNGVQVAVVVPTTLLSRQHFRTFSERFRGLPIRVQQASRLVGSKELALTKKEVA
DGKTDIVVGTHALLGAGINFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSATPIP
RTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDPLVIRETLMREHYRGGQSFYVCPRLA
DLADIHAFLQSDVPELKVAVAHGQMAAGELEDIMNAFYDGKYDVLLSTTIVESGLDVPTA
NTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTTMAERRLKVLQSLDTLG
AGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEVKGDEQVQDSGWSPQ
ISVGTSVMIPEDYVPDLHLRMGLYRRLGELADIGEIDGFGAEMIDRFGPLPKEVQHLLKI
VYIKSLCRTANVEKVDAGPKGVVLQFRNKEFPNPAALVAYIGKQGTMAKIRPDHSLFLTR
DLPTPEKRLTGAAMVMTQLAELARS
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atgatagccggattcgatgcaaagctggtggcgtcggccgatacgccgctgaccatcgga
aatgtgccctccggcatggaagccctgcttttggccgacatggcgcgggcagggacatcg
gtggcctatgtgatgtcggacggccagcgggtcgccgatctcgaacagatcctcggtttc
gtcgcgcctgacattccggtgctgactttgcctgcctgggactgcctgccctatgaccgc
gtgtcaccgagcgcagacacctcggcgcgcaggctggctgcgctctccggcctcatcagt
cacgcgaagaaaccgcatccggccatcgttctcgtcaccgtcaacgccatgctgcagaag
atggcgccgcgcgacatcatcgagagcctcggcttttccgcaaaacccggcaaccagatc
cgtatggaagacatcgccgcgcgactggagcgcaacggtttcgaccgggtggcgacggtg
cgtgaagtgggtgaatttgccgtgcgcggcggcattctcgatgttttcgttcccggtacg
gaagagccggtacggctcgatttcttcggcgatacgctggaaagcatccgcaccttcgat
ccggccagccagcgcaccatcggtcaggcgcgctcgcttgatctgaacccgatgagcgaa
gtgacgctgacgccggatacgatcggccgttttcgcaaaaattatctgtcgctattcggt
gcggcgacgcgcgacgatgcgctttatcaggccgtctccgagggccgccgttacgctggc
atggagcattggctgccgctgttttacgaacagctggaaaccgccttcgattatctcaag
ggtttccgcatagtcaccgatcatacggcgcgggaggcggcgaaggaacgttccaaactg
gtcctcgactattacgaggcgcgccgcgcttccggcgagaccaagggatcgacgcagggc
gcgccttacaagccggtatcgccggggcaaatctatctcgacggcaagagcttcgaggcg
gcactttccgccgtcaatgcggtgcggctgacgcccttcaacgaacacgataccgaaggc
cgtccggttgcgacgctggacgctcatgtcgggccacgctgggcacgcccaccgaccgaa
ggcgatagcgaagagcgggtcaacgtcttcgatctggcggtgaagcacattgccgagcgc
cgcgccaagggctggaaggtgctgatcaccggctggtcggaaggctctctcgaccggctg
ctgcaggtcttgaacgagcacgggcttgaaaagatcaagccggtggcatctctgaaagag
gtcgacacgctcggcaagggcgaggcggcttcggcagttctcagcctcgaagccggtttc
gagaccggaacgctcgcgatcatcggcgagcaggatattctcggcgaccgtatggtgcgc
cgctccagacgccgcaagcgcggcgcggatttcatttcggaagtggcggggctggacgag
ggttcgctcgtcgttcacgccgaacacggtatcggccgtttcgtcggtctgcagaccatc
gaggcggcgggtgcaccgcgcgcctgcctggaactgcattacgccgacgatgccaagctg
ttcctgccggtcgaaaacatcgatcttctctcgcgatacggttctgacgccgctgaagcc
acgcttgacagactgggtggcggcgcatggcagatgcgcaaggccaagctcaagaagcgc
ctgctcgacatggcagacgagcttatccgcatcgcagccgcgcgtctggtgcgccatgcg
ccggttctggccgcgccggacggtctttacgatgagtttgccgcccgcttcccctatgac
gagaccgaagaccagctgaacgccatcgaagcggttcgcgaggatctcggtgccgggcgt
ccgatggatcgcctcatctgcggcgatgtcggtttcggcaagaccgaagtggcgttgcgc
gccgcctttcttgccgccatgaacggcgttcaggtggcggtcgtcgtgccaaccacgctg
ctttcccgccagcatttccgcaccttttcggagcgttttcgcgggctgccgatccgggtt
cagcaggcctcgcggcttgtcggttccaaggagcttgcgctcaccaagaaggaagtggcc
gacggcaagacggatatcgtcgtcggtacacacgcgctgcttggtgcgggcatcaatttc
gccaatctcggcctgctgatcatcgatgaggagcagcatttcggcgtgaagcacaaggag
cgcctgaaggagctgaagagcgacgtgcatgtgctgacgctttcggcaacgcccattccg
cgcaccctgcagctggccatgactggcgtgcgcgaattgtcgctgatcaccacgccgccg
gtggaccgcatggcggtgcgtaccttcatttcgcccttcgatccgctggtgatccgcgaa
acgctgatgcgcgagcattatcgcggcggccagagtttctacgtctgcccgcgtcttgcc
gatctcgccgatatccatgctttcctgcaatcggatgtgccggagctgaaagtggcggtg
gcgcatggccagatggcggcgggcgaactcgaagacatcatgaacgccttctatgacggc
aaatatgatgtgctgctgtcgaccaccatcgtcgaatccggccttgatgtaccaactgcc
aatacgctgatcgtgcatcgcgccgatatgttcggtctcgcccagctttaccagctgcgc
ggtcgtgtcggccgttccaaggtgcgcgcctttgcgctgttcaccctgccggtcaacaag
gtattgacgacgatggcggagcggcggctgaaagtgctgcaatcgctcgatacgctgggc
gccggtttccagcttgccagccacgatctcgatattcgcggcgcgggtaatctcttgggc
gaggagcagtcgggccacatcaaggaagtcggtttcgagctttaccagcagatgctggaa
gaagccgtggccgaggtgaagggtgacgagcaggtgcaggatagcggctggtcgccgcaa
atctcggtcggcacctctgtcatgatcccggaagactatgttccggatctgcatctgcgc
atggggctttaccgccgtctcggcgagcttgccgatatcggcgagatcgacggttttggt
gcggaaatgatcgaccgtttcggcccgctgccgaaggaagtccagcatctcctcaagatc
gtctacatcaagtcgctctgccgcaccgccaatgtcgagaaagtcgatgccgggccgaag
ggcgtggtcctgcaattccgtaacaaggaattcccgaacccggcggccctcgtcgcctat
atcggcaaacagggcacgatggcgaagatccgccccgatcacagcctgttcctgacccgc
gatctgcccacgccggaaaaacggctgacgggtgccgctatggtcatgacacagcttgcg
gaactggcgcgttcctga
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