Rhizobium oryzihabitans: G3A56_24970
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Entry
G3A56_24970 CDS
T06770
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
roy
Rhizobium oryzihabitans
Pathway
roy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
roy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
G3A56_24970 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
roy03400
]
G3A56_24970 (ligD)
Enzymes [BR:
roy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
G3A56_24970 (ligD)
DNA repair and recombination proteins [BR:
roy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
G3A56_24970 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QIB41035
UniProt:
A0A7L5BQJ1
LinkDB
All DBs
Position
M15-12:1827126..1829618
Genome browser
AA seq
830 aa
AA seq
DB search
MGLQTYNAKRSFDKTPEPKGAKAEAQGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGIWHPIGDAKKGYRKGH
LEFELEGEKLKGRWHLVRMHGKPGESRENWLLIKGDDEEARHDAGVDILEERPESVKTGR
SVEEVAASPKDTWNSKPVSKKAASSSSGQKQAHALPKGARKQALPSFVPPALATLKPRPP
EGSRWLHEIKFDGYRLQARIDHGKLQLLTRTGLDWTEKFGDTVAGALKALPAETLLIDGE
IVVERESGASDFSALQQDLSEGRSDRFVFYAFDLIYLDGTDLRGAALMDRKALLEKLLPA
GNRHLRYSEHFEENGGLVLDHACRLSLEGVISKVRDSKYVSGRKGNWVKSKCSKRQEFVI
GGYTLSSSSDHAIGSLALGVYEDGKLRHVGRVGTGYTAEVAEMLLGRLTPLESKESPFSE
KLTALARRDLHFVRPELVAEVEFRAWSADGNLRHASFRGLREDKPAGEIEREEKAVSEQG
TPQSKIKFTHPDRLYWPDDGVTKEGLADYYTQVWRYMAPFVGNRPLALLRCPEGIDGQRF
FQKHAWRGVNKAIEQIRDPKDKAGEPLIRITDFDGMMALVQSAALEIHPWGATTANWEKP
DMITMDIDPGEDVSWQEVIDSALELKRRFEEAGLAAFVKTSGGKGLHVVAPLKPEAGWPA
LKAFAKAMADDMAMAEPEKYLSVATKAKRQGRIFLDYLRNGRGNTAVAPYSTRARPGAAI
SAPIEWAELSGEIGPAYFTVNNIGARLSALKKDPWDGFFAAARPLPKKAR
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggggttgcagacctacaatgccaaacgcagtttcgacaagacgccggagccgaaaggc
gcgaaggccgaggctcaaggatcgagtttcgtcatacagaagcatgatgcccgccgcctg
cattacgatttccgactggaaatggacggcgtccttaaaagctgggcggtaacgcggggg
ccgagcctcgacccggaagacaagcgccttgccgtgcatgtcgaggaccatcccttaagt
tatggcgatttcgagggtgtcatcccgaaaggacaatatggcggcggcaccgtcattgtc
tgggatcgcgggatatggcacccgatcggcgacgcgaagaagggctaccgcaaaggccat
ctcgaattcgaactggaaggcgaaaagctcaaaggccgctggcatctggtgcgcatgcat
ggaaagcccggcgaaagccgcgagaactggctgctgatcaaaggcgacgacgaggaggca
aggcatgatgccggtgtggatatactggaggagcggccggaatcggtaaagaccgggcgc
agcgtcgaggaggttgcggccagtccgaaggacacctggaattccaaacccgtatcgaaa
aaagccgcaagctcttcctcggggcaaaagcaggctcacgccctgcccaaaggcgcgcgc
aaacaggcgctgccgtccttcgtgccgccggcgctggcgacgctgaaaccccggccaccc
gaaggttcgcgctggctgcatgaaatcaagttcgatggttatcgccttcaggcccgtatc
gaccacggcaaactgcagcttttgacccgcaccggattggattggaccgagaagttcggt
gacaccgtggcaggcgcgctcaaggcgctgccggcggaaacgctgctgatcgacggcgaa
atcgtggttgagcgggagagcggcgcttccgatttttcggccttgcagcaggatttgagc
gaagggcgcagcgaccgcttcgttttttatgccttcgacctgatctatctggatggcacc
gatctgcgcggggcggcgctgatggatcgcaaggcgctgctcgaaaagctgctgcccgcc
ggcaaccgtcatcttcgctacagcgaacatttcgaggaaaacggtgggcttgtgctcgac
catgcctgccgcctcagccttgagggtgtcatctccaaggtcagggacagcaaatatgtc
tcgggccgcaagggcaactgggtgaaatccaagtgctcgaagcggcaggaattcgtgatc
ggcggctataccctgtcttccagttcggaccatgccatcggctcgctggcgctaggggtc
tatgaggacggcaagctgcggcatgtcgggcgcgtcggcaccggctacaccgctgaagtc
gccgaaatgctgcttggccgcctgacgccgttggagagtaaggaaagccctttttccgaa
aagctgacggcacttgcccgccgcgacctccatttcgtccggccggaactggtggccgaa
gtggagtttcgggcatggtccgcggatggcaatctgcgccatgcatctttccggggcctg
cgggaggataaaccggcgggggaaatcgaacgggaggaaaaagcagtgtcggaacaaggg
acgccgcagtcaaagatcaagttcacccatccggaccggctttattggccggatgacggc
gtgaccaaggaagggcttgccgattattatacgcaggtctggcggtatatggctcccttc
gtcggcaaccgccctctggcattactgcgttgtcccgaagggatagacgggcagcgtttt
ttccagaaacatgcctggcgcggtgtcaacaaggcgatcgaacagatcagggatccgaag
gacaaggctggcgaaccgctgatccggattaccgatttcgacggcatgatggcgctggtg
caatccgctgcgcttgaaattcatccatggggcgcgaccaccgcgaactgggaaaagccc
gacatgatcaccatggatatcgaccccggcgaggatgtgtcgtggcaggaggtgatcgat
tccgcactggaactgaaacggcgtttcgaagaggccggccttgccgccttcgtgaaaacc
tccggcggcaagggactgcatgtcgtcgcaccgttgaaaccggaagcgggatggccagcc
ctgaaggcctttgcgaaggccatggcggatgacatggccatggcagagcccgaaaaatac
ctctcggtggcaaccaaggcgaaacgccagggccgcatcttcctcgattatctgcgcaat
ggcaggggcaatacggctgtcgcgccctattcgacgcgcgcccggccgggagccgccatt
tcagcgccgatcgaatgggcggaactctccggcgagatcggtccggcttacttcaccgtc
aacaatatcggggcaagactttccgctctgaagaaggacccgtgggacggctttttcgcc
gccgcccggccgctcccaaaaaaggcgcgctga
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