KEGG   Rhizobium oryzihabitans: G3A56_24970
Entry
G3A56_24970       CDS       T06770                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
roy  Rhizobium oryzihabitans
Pathway
roy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:roy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    G3A56_24970 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:roy03400]
    G3A56_24970 (ligD)
Enzymes [BR:roy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     G3A56_24970 (ligD)
DNA repair and recombination proteins [BR:roy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     G3A56_24970 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QIB41035
UniProt: A0A7L5BQJ1
LinkDB
Position
M15-12:1827126..1829618
AA seq 830 aa
MGLQTYNAKRSFDKTPEPKGAKAEAQGSSFVIQKHDARRLHYDFRLEMDGVLKSWAVTRG
PSLDPEDKRLAVHVEDHPLSYGDFEGVIPKGQYGGGTVIVWDRGIWHPIGDAKKGYRKGH
LEFELEGEKLKGRWHLVRMHGKPGESRENWLLIKGDDEEARHDAGVDILEERPESVKTGR
SVEEVAASPKDTWNSKPVSKKAASSSSGQKQAHALPKGARKQALPSFVPPALATLKPRPP
EGSRWLHEIKFDGYRLQARIDHGKLQLLTRTGLDWTEKFGDTVAGALKALPAETLLIDGE
IVVERESGASDFSALQQDLSEGRSDRFVFYAFDLIYLDGTDLRGAALMDRKALLEKLLPA
GNRHLRYSEHFEENGGLVLDHACRLSLEGVISKVRDSKYVSGRKGNWVKSKCSKRQEFVI
GGYTLSSSSDHAIGSLALGVYEDGKLRHVGRVGTGYTAEVAEMLLGRLTPLESKESPFSE
KLTALARRDLHFVRPELVAEVEFRAWSADGNLRHASFRGLREDKPAGEIEREEKAVSEQG
TPQSKIKFTHPDRLYWPDDGVTKEGLADYYTQVWRYMAPFVGNRPLALLRCPEGIDGQRF
FQKHAWRGVNKAIEQIRDPKDKAGEPLIRITDFDGMMALVQSAALEIHPWGATTANWEKP
DMITMDIDPGEDVSWQEVIDSALELKRRFEEAGLAAFVKTSGGKGLHVVAPLKPEAGWPA
LKAFAKAMADDMAMAEPEKYLSVATKAKRQGRIFLDYLRNGRGNTAVAPYSTRARPGAAI
SAPIEWAELSGEIGPAYFTVNNIGARLSALKKDPWDGFFAAARPLPKKAR
NT seq 2493 nt   +upstreamnt  +downstreamnt
atggggttgcagacctacaatgccaaacgcagtttcgacaagacgccggagccgaaaggc
gcgaaggccgaggctcaaggatcgagtttcgtcatacagaagcatgatgcccgccgcctg
cattacgatttccgactggaaatggacggcgtccttaaaagctgggcggtaacgcggggg
ccgagcctcgacccggaagacaagcgccttgccgtgcatgtcgaggaccatcccttaagt
tatggcgatttcgagggtgtcatcccgaaaggacaatatggcggcggcaccgtcattgtc
tgggatcgcgggatatggcacccgatcggcgacgcgaagaagggctaccgcaaaggccat
ctcgaattcgaactggaaggcgaaaagctcaaaggccgctggcatctggtgcgcatgcat
ggaaagcccggcgaaagccgcgagaactggctgctgatcaaaggcgacgacgaggaggca
aggcatgatgccggtgtggatatactggaggagcggccggaatcggtaaagaccgggcgc
agcgtcgaggaggttgcggccagtccgaaggacacctggaattccaaacccgtatcgaaa
aaagccgcaagctcttcctcggggcaaaagcaggctcacgccctgcccaaaggcgcgcgc
aaacaggcgctgccgtccttcgtgccgccggcgctggcgacgctgaaaccccggccaccc
gaaggttcgcgctggctgcatgaaatcaagttcgatggttatcgccttcaggcccgtatc
gaccacggcaaactgcagcttttgacccgcaccggattggattggaccgagaagttcggt
gacaccgtggcaggcgcgctcaaggcgctgccggcggaaacgctgctgatcgacggcgaa
atcgtggttgagcgggagagcggcgcttccgatttttcggccttgcagcaggatttgagc
gaagggcgcagcgaccgcttcgttttttatgccttcgacctgatctatctggatggcacc
gatctgcgcggggcggcgctgatggatcgcaaggcgctgctcgaaaagctgctgcccgcc
ggcaaccgtcatcttcgctacagcgaacatttcgaggaaaacggtgggcttgtgctcgac
catgcctgccgcctcagccttgagggtgtcatctccaaggtcagggacagcaaatatgtc
tcgggccgcaagggcaactgggtgaaatccaagtgctcgaagcggcaggaattcgtgatc
ggcggctataccctgtcttccagttcggaccatgccatcggctcgctggcgctaggggtc
tatgaggacggcaagctgcggcatgtcgggcgcgtcggcaccggctacaccgctgaagtc
gccgaaatgctgcttggccgcctgacgccgttggagagtaaggaaagccctttttccgaa
aagctgacggcacttgcccgccgcgacctccatttcgtccggccggaactggtggccgaa
gtggagtttcgggcatggtccgcggatggcaatctgcgccatgcatctttccggggcctg
cgggaggataaaccggcgggggaaatcgaacgggaggaaaaagcagtgtcggaacaaggg
acgccgcagtcaaagatcaagttcacccatccggaccggctttattggccggatgacggc
gtgaccaaggaagggcttgccgattattatacgcaggtctggcggtatatggctcccttc
gtcggcaaccgccctctggcattactgcgttgtcccgaagggatagacgggcagcgtttt
ttccagaaacatgcctggcgcggtgtcaacaaggcgatcgaacagatcagggatccgaag
gacaaggctggcgaaccgctgatccggattaccgatttcgacggcatgatggcgctggtg
caatccgctgcgcttgaaattcatccatggggcgcgaccaccgcgaactgggaaaagccc
gacatgatcaccatggatatcgaccccggcgaggatgtgtcgtggcaggaggtgatcgat
tccgcactggaactgaaacggcgtttcgaagaggccggccttgccgccttcgtgaaaacc
tccggcggcaagggactgcatgtcgtcgcaccgttgaaaccggaagcgggatggccagcc
ctgaaggcctttgcgaaggccatggcggatgacatggccatggcagagcccgaaaaatac
ctctcggtggcaaccaaggcgaaacgccagggccgcatcttcctcgattatctgcgcaat
ggcaggggcaatacggctgtcgcgccctattcgacgcgcgcccggccgggagccgccatt
tcagcgccgatcgaatgggcggaactctccggcgagatcggtccggcttacttcaccgtc
aacaatatcggggcaagactttccgctctgaagaaggacccgtgggacggctttttcgcc
gccgcccggccgctcccaaaaaaggcgcgctga

DBGET integrated database retrieval system