Rhodococcus oxybenzonivorans: CBI38_06865 Help Entry CBI38_06865       CDS       T08279                                  Name (GenBank) ATP-dependent DNA ligase   KO K01971   bifunctional non-homologous end joining protein LigD [EC:6.5.1.1] Organism roz  Rhodococcus oxybenzonivorans Pathway roz03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:roz00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     CBI38_06865  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:roz03400]     CBI38_06865 Enzymes [BR:roz01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      CBI38_06865 DNA repair and recombination proteins [BR:roz03400]  Prokaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     Two-component NHEJ DNA repair complex      CBI38_06865 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S Motif Other DBs NCBI-ProteinID:  AWK71340 UniProt:  A0A2S2BRT5 LinkDB All DBs Position 1442768..1445041 Genome browser AA seq 757 aa AA seqDB search MASTGTRQVTVDGHRLSLTNLDKVLYPESGTTKREVIEYYTHIAPAMIPHILDRAATRKR WPNGVESDPFFEKNLAASAPAWLERRALEHSDRSVHYPILNSVAALAWAGQQAALEIHVP QWRFDGSRRGPATRIVFDLDPGPGVGLPECAEVARAVRDLVAELGWTAFPVTSGSKGIHL YVPLDRKLEGSGASTVAKQVATGLEKLMPDLVTATMAKAVRAGKVFVDWSQNNPSKTTIA PYSLRGRPQPLVAAPRSWDELDDPELRQLSFTEVLERWETDGDLLADLDPPWENDATLAD YRRKRDPSRTPEPMPDKVKPGAGNSFVIQEHHARRLHYDLRLEREGVLVSWAVPKNVPTS TGENRLAVHTEDHPLEYLTFSGTIPKGEYGGGTMTIWDTGTYDVEKWRDDEVIVQLHGEQ VEGRFALIRTKGDQWLMHLMKDQSTGESTSAELPRDLSPMLATPGTLDGLDPDEWAFEGK WDGIRVIAEIGGGELRLRSRAGNDKTRDYLGLGWLADALADHDVVLDGEVVAFDRHGITS FGLLQQGNDPHFLAFDVLYLDGVSLLRKKYTDRRRVLEALAAKVDDLVVPPQLHGTAEEA LEESGRRGWEGVVAKRRESVYLPGKRGSSWIKVKNWRTQEAVIGGWRRGQGGRSRGIGSI LLGIPQDGGLRYVGRVGTGFTQRDLEELASTLGPLETETSPFVDDLPTADRKGAVWVEPT LVGEVRFMEWTGAGRLRHPSWRGLREDKRPADVVDES NT seq 2274 nt NT seq  +upstreamnt  +downstreamnt atggcgagcacgggaacccggcaggtgacggtcgacggacatcggctgtcgctgaccaac ctggacaaggtcctctaccccgagtcgggcaccaccaagcgtgaggtgatcgagtactac acgcacatcgcgcccgcgatgattccccacatcctcgatcgggccgccacccgtaaacgt tggccgaacggcgtggagagcgacccgttcttcgagaagaacctggccgcttcggcccct gcctggctggaacgacgggccctggaacactccgaccgttccgtgcactatccgattctc aactctgtggcggcgctcgcctgggcgggtcagcaggccgcgctcgaaatccacgtgccg cagtggcgattcgacgggtcgcggcgcggaccggccacccggatcgtcttcgacctcgac ccgggaccgggcgtgggtctgccggaatgcgccgaggttgcccgcgccgtccgggacctc gtagccgagctcggctggaccgccttcccggtgacgagcggcagcaagggcattcacctc tatgtgcccctcgaccggaagttggaggggtcgggggcgtcgaccgtcgcgaagcaggtg gcgacgggcctggagaagctgatgcccgacctggtcaccgccacgatggccaaagcggtt cgcgccgggaaggtgttcgtcgactggagtcagaacaatccgtcgaagacgaccatcgcg ccgtactcgttgcggggacgaccgcagccgttggtcgcggcgccgcgcagctgggacgaa ctcgacgatccggagttacggcagttgagcttcacggaagtgctcgagcggtgggagacc gacggtgacctgctggccgatctcgacccgccgtgggagaacgacgcgacgctggctgac tatcgccgcaaacgcgacccgagccgaaccccggaaccgatgccggacaaggtcaaaccc ggtgcgggcaacagtttcgtcattcaggaacatcatgcccggcgcctgcactacgacctc cggctggagcgcgaaggagtgctggtgtcgtgggcggtgccgaagaatgtgcccacctcc accggtgagaaccggttggccgtccacaccgaggaccacccgctcgaatacctgaccttc tcgggcaccatccccaagggggagtacggcggcggaaccatgacgatctgggacaccggc acgtacgacgtcgagaagtggcgcgacgacgaagtgatcgtgcagttgcacggcgagcag gtggagggtcgtttcgcgctgatccgcaccaaaggtgaccagtggttgatgcatctgatg aaagaccagtcgaccggggaatcgacatccgccgaactgccacgggatctttcaccgatg ctggcgacgccgggcaccctcgacgggctcgatcccgacgagtgggctttcgaaggaaaa tgggacggcatcagagtgatcgccgagatcggtgggggagaactgcgtctgcgcagccgg gcaggtaacgacaagacccgcgactatcttggattgggctggcttgcagacgctctcgcc gaccacgacgtcgtcctcgacggtgaggtggtcgccttcgatcggcacggaatcaccagt ttcggcctgctccaacaaggaaacgacccccacttcctggcgttcgacgtgctgtacctg gacggtgtgtcgttgctgcggaagaagtacaccgaccgccgtcgggtgctcgaagccctc gccgcgaaggtcgacgacctcgtggtgccgccgcagctacacggtacggcggaggaggcg ctggaggagagtggccgccgcggttgggaaggtgtggtggccaaacgtcgtgagtccgtg tacttgccgggaaagcgtgggtcgagctggatcaaggtgaagaactggcggactcaggaa gcggtgataggaggttggcggcgcgggcagggcggccgttcccgggggatcggttctatt cttctcggaatcccccaggacggcggactgcgctacgtgggccgggtaggtaccggattc acccagcgcgacctggaggaactcgcatccaccctcggcccgctcgagaccgaaaccagc cccttcgtcgacgacctcccgaccgccgaccgtaaaggtgcggtgtgggtggaacccact ctggtgggggaggtgcgattcatggaatggaccggcgccggacgactacgacacccgagc tggcgtgggttgcgggaagacaagcggccggcggatgtggtggacgaatcgtag

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