Ruminiclostridium papyrosolvens: P0092_15270
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Entry
P0092_15270 CDS
T08965
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rpay
Ruminiclostridium papyrosolvens
Pathway
rpay03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpay00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
P0092_15270 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpay03019
]
P0092_15270 (rnr)
03016 Transfer RNA biogenesis [BR:
rpay03016
]
P0092_15270 (rnr)
Enzymes [BR:
rpay01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
P0092_15270 (rnr)
Messenger RNA biogenesis [BR:
rpay03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
P0092_15270 (rnr)
Transfer RNA biogenesis [BR:
rpay03016
]
Prokaryotic type
tRNA degradation factors
P0092_15270 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
CSD
OB_Dis3
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WES33114
LinkDB
All DBs
Position
complement(3402384..3404750)
Genome browser
AA seq
788 aa
AA seq
DB search
MADLEERKERIVAFMRDKAYKPLLFKELLMVLDVPEKDIELFTQVIDELEEEGRIFKTHG
KRYGVPTRLNLVTGRIQGHERGYGFLIPDDELMEDVFIPADSLNGAMHNDRVVARVNKKS
STDRRMEGEIIRILKRANTTLVGTFENSMSFGFVVPDNKRISGDIFVSKSEFQGAKKGQK
VVVEILKYPEARRNAEGRIIEIIGDRNETGVDILSIIKSYNLEEDFPEDVLNQANSVSET
VTEEMIQGRRDLRGLRMVTIDGEDAKDLDDAVSIEILENGNYRLGVHIADVTNYVTENSP
LDIEALDRGTSVYLVDRVIPMLPRKLSNGICSLNPHVDRLSFTVIMDIDKNGRVYNHEIF
ESVINIDERMTYTNVYKILADNDQELIKRYSHVAPDFYKMQELALILRKKRFQRGAIDFD
FDEAKVVLDEKGRPIDVKRYEITIANQIIEEFMLACNETVAEHFFWTNTPFVYRVHEDPD
EEKIHNLNEFLYNLGYSIKGINKIHPRALQDLLEKVKGTRHERIISTVMLRSLQKARYSN
ESTGHFGLAAKYYCHFTSPIRRYPDLIIHRIMKLYLKGGMSEEKIRQLEGILPEIAKQCS
ERERGADEAERESEDLKKVEYMKAHEGEIFEGIIANVTSFGMFIELDNTIEGLVRMSSME
DDYYNYDEAHYCLVGERTRKIYRIGDTVKVILAKADISARKIEFILVESDDDFDSIDEET
EDEIIFTKRKKEPSAVKRTSRSTKPDKDKADDKGRRSTSSGNKPGKKGKIIDKKVYEKIM
GKRKRKKR
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atggcagacttggaagaacgtaaagaacgaattgttgcatttatgagggataaagcatat
aaacctcttttatttaaggaacttttaatggttcttgacgtgccggaaaaagatattgaa
ctctttacacaggtaattgatgaacttgaagaagaaggaagaatatttaagacccatgga
aaaaggtatggtgtaccgacaaggctaaatctggtgacaggaaggattcaggggcatgaa
aggggatatggcttcctcatacccgatgatgagcttatggaagatgtatttatccctgca
gacagccttaacggagctatgcataatgacagagttgtggcacgggtaaataagaaaagt
tcaacagacaggagaatggaaggcgagataatacgtattctgaaaagggctaataccact
ttggtaggaacctttgaaaacagtatgagcttcggttttgtggttcctgataataagaga
atttcaggagatatttttgtctcaaagagcgagtttcagggtgcaaaaaaaggacagaag
gttgtagttgagatactaaaatatccggaagccagaagaaatgctgaaggcaggataatt
gaaataataggcgacaggaatgaaacaggggtcgatatcctttccataataaaatcctat
aaccttgaagaggatttccctgaggatgttctaaatcaggcaaattccgtaagtgaaaca
gtaacagaggaaatgatacagggaaggcgtgatttaaggggactccgcatggttacaata
gacggagaagatgcaaaagaccttgatgatgcggtttcaattgaaatactggaaaacggg
aattacagacttggtgttcacattgcagatgtaaccaactatgttacggaaaactctcct
cttgatattgaagcacttgacagagggacaagtgtatatcttgtggacagggttatacca
atgcttcctagaaaattgtccaacggtatttgcagccttaacccacatgttgacaggctg
agttttaccgtaattatggacatagataaaaacggaagagtatataaccatgagatattt
gaaagtgtaattaatatagatgagagaatgacatacaccaacgtatataagatactggcg
gataatgaccaggagcttataaaacgctacagtcatgttgctcctgatttttacaaaatg
caggaacttgcacttatattaaggaagaaaagattccagagaggtgctattgatttcgac
tttgatgaagcaaaggtagtactggatgaaaagggcaggcctattgacgtaaaaagatat
gaaataaccattgcaaaccagataattgaagaatttatgctggcctgcaatgaaactgtt
gcggagcattttttctggacaaatacaccctttgtatatagagtacacgaagaccctgat
gaagaaaaaatccacaatctgaacgaatttctttacaatctgggatacagcataaagggc
ataaataaaattcatcccagagccttacaggaccttttggaaaaggttaaaggaaccaga
cacgagagaataatcagtacggttatgctaagatccttacaaaaagcccggtatagcaat
gaaagtacaggacacttcggtttggctgcaaaatactattgtcactttacatcgcctatc
agacgatatccggatttgataattcacaggataatgaagctatatctgaaaggcggaatg
agtgaggaaaaaatccgccaattagaaggaatactgcctgaaatagcaaaacagtgctct
gagcgtgaaagaggagcagatgaggctgaaagagaaagtgaagacctgaaaaaggtagaa
tatatgaaagctcatgaaggagagatatttgaaggtattattgcaaatgtaacttccttt
ggtatgttcatagagcttgacaacaccatagaaggtctggtcagaatgagcagcatggaa
gatgactactataactatgacgaagctcattactgtcttgtaggtgaacgaacacgcaaa
atatacagaataggcgatacagtcaaggttattcttgcaaaagccgacatatctgcaagg
aaaattgagtttatactggttgagtctgatgatgattttgacagcattgacgaggaaact
gaagatgaaataatatttacaaagcgcaagaaagaaccttcagctgttaagagaaccagc
cggagtacaaaaccggataaggataaggctgatgataagggcagaaggagtacttcttcc
ggcaataaacccggcaaaaagggaaaaatcatagataaaaaggtttatgaaaaaataatg
ggaaaaaggaaaaggaaaaaaaggtag
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