Ruminiclostridium papyrosolvens: P0092_20445
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Entry
P0092_20445 CDS
T08965
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rpay
Ruminiclostridium papyrosolvens
Pathway
rpay03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpay00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
P0092_20445 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpay03400
]
P0092_20445 (mfd)
Enzymes [BR:
rpay01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
P0092_20445 (mfd)
DNA repair and recombination proteins [BR:
rpay03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
P0092_20445 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AA_kinase
DUF3232
RecG_dom3_C
KdpD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
WES34099
LinkDB
All DBs
Position
complement(4669371..4672895)
Genome browser
AA seq
1174 aa
AA seq
DB search
MNFFTDPLLKIDEYNTLLTNVREGKGPVSVIGPSDSQKVHMIYSLCTHLQRRGLYVTYNE
MQARRAYEDFSFFLGDDVLYYPPKETMLYNIEARSNDIIYQRTRTLLRCLEGNYKLIVMS
AEALIQMISPVELFRGGVVDFSVGLQIDLDELVSKLVLYGYERVEAVEGKAQFAVRGGII
DIFAVNSEHPVRIELFDTEVDSIRYFDETTQRSTNSIEECRIAPARDVVYKDISKEAIVS
KIKKDLADYVKKLKQKDNSEGVKNISKRVEEDIDNLVEHHYFPGIDRYLPYILETPASVI
DYIERESIVVLDETLRITQRIENVQLEHEELAKSLLEKGGILPKGAEWAFSADFIVDRIL
NLRTVTLSAISSNNSLIRPYNQISIPCKSGNSYQSHIDLLVDDIEQLRKKEYKIIVLSGP
SGRGHRLVETLATNEISSSYKDNTEYKLQNGEVVVTHGSLQKGFEYPTAAFVVISDIEVF
GQDKRIKKAKAKRAGNKIKAFSDLNVGDFVVHQAHGIGQYIGIEKLSVGEIKRDYLKIRY
QEGDFLYIPTNQLDLLQKYIGSEGKTPKVNKLGGTEWAKTKNRVKESLQQLAAELIKLYA
QRQSAKGHAFCEDTVWQRQFEELFPYQETDDQLKCIDEIKKDMESERLMDRLLCGDVGYG
KTEVAIRAVFKSVMDGKQVAYLAPTTILAQQLYENFKKRMSDFPVTVDVMSRFRTPAEQK
KIVKSVKAGNTDILIGTHRLLQKDIEFKDLGLLVVDEEQRFGVTHKEKLKTLKPNVDVLT
LTATPIPRTLHMSLVGIRDISVLEDPPEERYPVQTYVMEYNMELIRDGIIREMARNGQVF
YMYNRVRGIDLKAQEIRTMIPEARVAVAHGQMNEKELEDVMYGFINGEYDVLVCTTIIES
GLDMPNVNTIVVEDADRMGLSQLYQIRGRVGRSNRLAYAYITYKKDKVLSEVAEKRLQAI
KEFTEFGSGFRIAMRDLEIRGAGNLLGPEQHGHLETVGYEMYCKLLDEAVQELSGKEVRT
TDEEMAVDLNVNAYIDDEYISSEEQKIDMYKKIAAIQNENDVIDLRDELIDRYGDIPEEV
ENLMDIAYIKALAVECGFIGITQKEDIILFALRKSASAVSQYLGVLMDKYPRRIMLNASS
NPYLSFKLINSSSRENLANIKILLQYIIKLQSNG
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttttacagatcctctcttgaagatagatgaatataatacccttttaaccaat
gtgcgtgaagggaaagggcctgtctcggttatcggcccttcagattcacaaaaagtgcat
atgatatattccctatgtactcatttacagagaagaggactgtatgtaacctacaatgaa
atgcaggcccggcgagcttatgaggatttttccttttttctgggtgatgacgtcctgtac
tatcctcctaaagagaccatgctatataatatagaagccagaagcaacgatattatatat
caaagaactagaacattactgaggtgcttagagggtaactacaagttgattgtaatgtca
gccgaagcattaatacagatgatttcacctgttgaactcttcagaggaggagttgttgat
ttttctgtaggtctgcaaattgatcttgatgaactggtttcaaagcttgttttatatggc
tatgaaagagttgaagctgttgagggcaaagcccagtttgctgtccgtggggggattatt
gatatttttgcggtaaacagtgaacacccggtgcgtattgaactgtttgataccgaagtt
gattctataaggtattttgatgaaacaacgcagaggtccacaaactcaattgaagagtgc
agaattgcccctgcaagagatgtagtatacaaggatatatcaaaggaagcaattgtttca
aagataaaaaaagatttggcagactatgttaaaaagctcaagcaaaaggacaacagtgaa
ggtgttaaaaatatatcaaagcgtgttgaggaagacatagataacctggttgaacaccac
tattttccgggcattgacagatacctcccgtacattctggaaactcctgcttccgtaatt
gattacattgagagggaatcaatagttgtactggatgaaaccctgaggataactcaaaga
attgagaatgtccagcttgagcatgaagagctggcaaaaagtcttctggaaaaaggcggt
attttgcctaaaggagcagaatgggctttttctgcagacttcatagtagaccggattttg
aatttgaggactgtaacattgtccgccatttcatctaacaactcccttatcagaccgtat
aatcagatatcaataccatgtaaatcagggaattcttaccaaagccatatagatttgctt
gttgacgacattgaacagctaaggaaaaaagaatataaaataatagttctttcaggcccc
agcggcagaggacacaggttagttgaaacccttgcaacaaatgagatttcttccagttac
aaagataataccgagtataagttgcagaacggggaggttgttgtaactcacggcagcttg
cagaaagggtttgaataccctacggcggcttttgttgtaataagtgatatcgaggtattc
ggacaggataagcgaataaaaaaagcaaaggcaaagagagccggcaacaaaataaaggcc
ttttcggacctgaatgttggagattttgtcgtacatcaggctcacggtataggccaatac
atcggtattgaaaagctcagtgttggtgaaattaagagggattatctgaaaattcggtat
caggaaggagacttcctttacattcccaccaaccagctggatttgctccaaaaatacatt
ggctctgaaggcaaaaccccaaaggtcaataagcttggaggaactgagtgggctaaaacc
aagaaccgtgtaaaggaatctctgcaacagcttgcggcagaactcataaagctttatgct
caaaggcagtctgcaaagggtcatgctttttgtgaagataccgtatggcaaagacagttt
gaagagctattcccatatcaggaaaccgatgaccagcttaaatgtattgatgaaataaaa
aaggatatggagtcagaaagactcatggacagactcctttgcggagatgtgggctacggc
aaaacagaagtcgctataagggctgtatttaagtctgttatggacggaaagcaggtagca
tatcttgctccaaccactatcctggcccaacagttgtatgagaactttaagaaaaggatg
agcgacttcccggtaactgtggatgtcatgagcagattcaggactcctgcagagcagaaa
aaaatagtaaaatccgtaaaagccggaaatacggatatactcatcggtacccacaggctt
ctgcaaaaggatattgaatttaaagatcttgggctattggtagttgacgaggagcaacgt
tttggagtaacccacaaagaaaagcttaaaacattaaagccaaatgttgacgtactcaca
ttgacagcaacacctattccgagaacacttcacatgtccttagtgggaataagggatatc
agtgttttagaagatccgccggaagaaagataccctgttcagacctacgttatggagtac
aatatggagcttatacgagatggcataatccgtgaaatggcaagaaacggtcaggttttc
tatatgtataaccgagtaaggggtattgacttaaaggcacaggaaatcaggacaatgatt
cccgaagcaagagttgcggtcgcccacggacaaatgaatgaaaaagaacttgaagatgta
atgtacggttttataaacggggagtatgacgtccttgtatgtactaccattatagagtcg
ggtcttgatatgcccaatgttaatactattgttgtagaggatgcagacagaatggggttg
tcccagctttatcagataagaggaagagttgggagatccaacaggcttgcatatgcctat
atcacatataaaaaggacaaggttttgtcagaggtagcagaaaagaggcttcaggctata
aaagaatttactgagtttggttcaggcttcagaatagccatgagagatcttgaaataaga
ggagcgggaaacttacttgggccggagcagcacggacatctggaaacagttggttacgaa
atgtactgcaagctcttggatgaagcggttcaggagctcagcggcaaggaagtccgcact
acggacgaggaaatggcagttgacttgaatgttaatgcatatatcgatgatgaatatata
agctcagaagagcaaaaaattgatatgtataagaaaattgccgcaatacaaaatgaaaat
gatgtaattgatttaagggatgagttgatagacagatacggggatatacctgaagaagtt
gaaaacctgatggatattgcgtatatcaaggcacttgctgtggagtgcggttttatcggc
attacacagaaggaggatataatactgtttgcactgcgcaaatctgcgtcagctgtatct
caatatctgggagtgctgatggataaataccctagaaggattatgctcaatgccagcagc
aacccttatttgtcattcaaattaataaattcctccagcagagaaaatttggcaaatatt
aagattttgttacaatacattattaaattgcagtctaatggataa
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