Rhodopseudomonas palustris BisB18: RPC_3685
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Entry
RPC_3685 CDS
T00336
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpc
Rhodopseudomonas palustris BisB18
Pathway
rpc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
RPC_3685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpc03400
]
RPC_3685
Enzymes [BR:
rpc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
RPC_3685
DNA repair and recombination proteins [BR:
rpc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
RPC_3685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ABD89220
UniProt:
Q210G6
LinkDB
All DBs
Position
complement(4108118..4110880)
Genome browser
AA seq
920 aa
AA seq
DB search
MARSHRGFPVTLDNLKLYRKKRDFEKTAEPSGEAKVAPSQRRRFVIQKHDATRLHYDLRL
EFDGVFKSWAVTRGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPEGQYGGGTVQLWDRGYW
EADDPERGFKTGDLKFTLHGEKLHGSWVLVRMRNDRSGGKRTNWLLIKHRDDDAREGDAN
DILAQEASVASGRAMEEIAAGKGRAPKPFMVKAARAKADAVWDSNRGLAAEARGEREAPA
KRRAASRPAKQAKAKQAKAKPAKRAKAKAVAAMPDFIAPQLCSSVERPPGGAGWGHEIKF
DGYRVQLRVEGGQATLKTRKGLDWTRKFRAIADQAAALPDAIIDTEIVALDAAGAPDFAA
LQAALSDENTDNLICFAFDLLFAEGEDLRALPLSERKQRLQEMLEQARGRRKQSVIRYVE
HFESGGDAILQSACKMSLEGIVSKKLDAPYRSGRSESWTKAKCRAGHEVVIGGWKSNAGK
FRSLMVGVHRDDHLAYVGIVGTGFGQVMVKRIMPALKANASNENPFGGKTAPKKTAEVHW
LKPELVAEIEFAGFTGAGMVRQAAFKGLRQDKPAEEVEAETPKKTAVAEPGRGKRGGKAK
AGAAKPAASKPAAAKPGHPAQVMGVLISKPDKQLWPDASDGEPVTKLDLARYFEAVGDWM
LPHIKGRPCSIVRAPDGIKGEQFFQRHAMPGTSNLLELVSVSGDRKPYLQVDRVEGLAAV
AQIGGLELHAWNCAPDAPDVPGRFVFDLDPAPDVAFSDVVAAAREMRERLTALGLESFCK
TTGGKGLHVVTPLSKSKDNVDWKQAKAFAQAVCRQMAEDSPERYLLNMSKKLREGKIFLD
YLRNDRMATAVAVLSPRARDGATVSMPLTWPQVKGDLDPKRFTLRTVPGLLAKSKAWAGY
DEAATPLKAAIKRLASSGTT
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggctcgctcgcacagaggatttcccgtgacgctcgacaacctcaagctctatcgcaag
aagcgcgacttcgagaagaccgcggagccgagcggcgaagcgaaagttgcgccgtcgcag
cgtcgccgcttcgtgatccagaaacacgatgccacaaggctgcactacgatctgcggctg
gaattcgacggcgtgttcaagtcgtgggcggtgacgcgcgggccgtcgctcgatccgcac
gacaagcggctcgcggtcgaggtcgaggaccatccgctcgactacggcgatttcgaaggc
accattccggagggccagtatggcggcggtacggtgcaattgtgggatcgcggttactgg
gaggccgacgatccagagcgcggcttcaagaccggcgacctcaaattcacgctgcacggc
gagaagctgcacggctcctgggtcttggtgcggatgcgcaacgatcgcagcggcggcaag
cgtaccaactggctgctgatcaagcaccgcgacgacgacgcccgcgaaggcgacgccaac
gacatcctcgcacaggaagcctcggtggcgtcgggccgcgcgatggaggagatcgctgcc
ggcaagggccgcgcgccgaagccgttcatggtgaaagccgcgcgggccaaggccgacgcg
gtgtgggattccaatcgcgggcttgcggccgaggcacgcggcgagcgtgaagcgccagcc
aagcgccgcgcggcgtcaagaccggcgaaacaggccaaggcgaaacaggccaaggcaaaa
cccgccaagcgcgccaaggcaaaggccgtcgccgcgatgccggacttcatcgcgccgcag
ctctgcagctcggtggagcgaccgcccggcggcgcgggctggggccacgagatcaagttc
gacggctaccgcgtgcaattgcgcgtcgaaggcggccaggccacgctgaagacccgcaag
gggctggactggacgcggaaattccgggccatcgccgaccaggccgcggcgctgccggat
gccatcatcgacaccgagatcgtcgcgctcgacgccgccggcgcgccggatttcgccgcc
ttgcaggccgcattgtcggacgagaacaccgacaatctgatctgctttgcgttcgatctg
ttgttcgccgagggcgaggatctgcgcgccttgccgctcagcgagcgcaagcagcggctt
caggagatgctcgagcaggcgcgcggccgccgtaagcagagcgtgatccgctatgtcgag
cacttcgaaagcggcggcgacgcgatcctgcaatcggcctgcaagatgtcgctggaaggc
atcgtctccaagaagctcgacgcgccgtatcgctccggccgcagcgagagctggaccaag
gcgaagtgccgcgccggccacgaggtggtgatcggcggctggaagagcaacgccggcaaa
ttccgctcgctcatggtcggtgtccatcgcgacgatcatctggcctatgtcggcatcgtc
ggcaccggctttggtcaggtcatggtgaagcgcatcatgccggcgctgaaggcgaacgcc
tcgaacgagaatccgttcggcggcaagaccgcgccgaagaagaccgcagaggtgcattgg
ctgaagccggagctggtggcggagatcgaattcgccggcttcaccggcgccggcatggtg
cgccaggcggcgttcaagggcctgcgccaggacaagccggccgaggaggtcgaggcggaa
acgccgaagaaaaccgcggtggccgaaccgggccgcggcaagcgcggcggcaaagccaag
gcgggcgcggcaaagccagccgcgtcgaagcccgccgcggcgaagcccggccatcccgcg
caggtgatgggcgtgctgatctccaagcccgacaagcaattgtggcccgacgccagcgat
ggtgagccggtgaccaagctcgatctggcgcgctacttcgaggcggtcggcgattggatg
ctgccgcacatcaagggccggccgtgctcgatcgtgcgggcgccggacggcatcaaaggc
gaacagttcttccagcgccacgccatgcccggcacctcgaacctgctggagctggtctcg
gtctcgggcgaccgcaagccgtatctgcaggtcgaccgcgtcgagggcctcgccgcggtg
gcgcagatcggcgggctggagctacacgcctggaattgcgcgccggatgcccccgacgtc
cccggccgtttcgtgttcgacctcgatccggcgcctgacgtggcgttttccgacgtggtg
gccgcggcgcgcgagatgcgcgaacgcttgaccgcgttgggcctggagagtttctgcaag
accaccggcggcaaggggctgcatgtggtgacgccgctctcaaagtcgaaagacaatgtc
gactggaaacaggccaaggcgttcgcccaggcggtgtgccggcagatggccgaggatagc
cccgagcgctatttgctcaacatgtcgaagaagctgcgcgagggaaagatcttcctggac
tatctgcgcaacgaccgcatggcgaccgcggtggcggtgttgtcgccgcgggcgcgcgac
ggcgccacggtgtcgatgccgttgacttggccgcaggtgaagggcgatctcgatccgaag
cgattcacgttgcgcacggtgcccgggttgttggcgaaatccaaagcctgggcgggttac
gacgaagcggccaccccgctgaaggctgccatcaagcggctggcctccagcggaacgacg
tag
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