Rhodopseudomonas palustris BisA53: RPE_0426
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Entry
RPE_0426 CDS
T00400
Name
(GenBank) 3'-5' exonuclease
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
rpe
Rhodopseudomonas palustris BisA53
Brite
KEGG Orthology (KO) [BR:
rpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rpe03016
]
RPE_0426
Enzymes [BR:
rpe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
RPE_0426
Transfer RNA biogenesis [BR:
rpe03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
RPE_0426
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNase_H_2
RNase_T
Motif
Other DBs
NCBI-ProteinID:
ABJ04385
UniProt:
Q07UJ9
LinkDB
All DBs
Position
470961..471575
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AA seq
204 aa
AA seq
DB search
MTIRLHRGDLPDLSRYTDSVAIDTETMGLNPHRDRLCVVQLSNGDGSADVVQIPLGHTEA
PNLKKLLGDPAVTKIFHFARFDLSALSNALGVMPQPIYCTKIASRLCRTYTDRHGLKDLV
REVLGIDLSKQQQSSDWGAQNLTDAQLAYAASDVLHLHALRARLDAMLAREGRTAMAQAC
FDFLPTRAMLDLSGWNNEDIFAHS
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgaccatccgactgcatcgcggcgacttgccggatctctcccgctacaccgactcggtg
gcgatcgataccgaaaccatggggctcaacccgcatcgcgaccggctttgcgtggtgcaa
ttgtcgaacggcgacggcagcgccgacgtggtgcagattccgctcggccacaccgaggcg
ccgaatctcaagaagctgctgggcgatccggcggtgaccaagatcttccacttcgcccgg
ttcgacctgtccgcgctctccaacgcgcttggggtgatgccgcagccgatctactgcacc
aagatcgcctcgcggctgtgccggacctataccgaccgccacggcttaaaagacctggtg
cgcgaagttctcggcatcgatctgtcgaagcagcagcaatccagcgattggggcgcccaa
aacctgaccgatgcacagctggcctacgccgcctccgacgtgctgcatctgcatgcgctc
cgcgcccggctcgacgcgatgctggcgcgcgaggggcgcaccgcgatggcgcaggcctgt
ttcgacttcctgccgacccgggcgatgctcgacctgtccggctggaacaacgaggatatc
tttgcgcattcttga
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