Rhodopseudomonas palustris BisA53: RPE_1055
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Entry
RPE_1055 CDS
T00400
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rpe
Rhodopseudomonas palustris BisA53
Pathway
rpe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rpe00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RPE_1055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpe03021
]
RPE_1055
Transcription machinery [BR:
rpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RPE_1055
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
GOLD_2
Motif
Other DBs
NCBI-ProteinID:
ABJ05009
UniProt:
Q07SS5
LinkDB
All DBs
Position
complement(1192713..1194827)
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AA seq
704 aa
AA seq
DB search
MATKAKTLQTKDSKDDKAVDAPEKEAADAPSPLLDLSDAAVKKMIKQAKKRGFVTFDQLN
EVLPSDTTSPEQIEDIMSMLSDMGINVSESDDTDNEEEETKEEADDEPDTDLVEVTAKAV
TETKKSEPGERTDDPVRMYLREMGTVELLSREGEIAIAKRIEAGREAMIAGLCESPLTFQ
AIIIWRDELNEGKIFLRDIIDLEATYAGPDAKNNMNPALAAPEGETSEDPDAVAAPPAAP
PQPTPFRAGAPRPAPAATPGEEGKDPAESAAEGDMDDDEFENQMSLAAIEAELKPKVVET
FDKIAENYKKLRRLQEQDISNQLQNETLSPAQERKYKKLKDEIIVEVKSLRLNQARIDSL
VEQLYDINKKLVSFEGRLLRLGDSHGVAREDFLRNYQGSELDPRWLNRVSKLSAKGWKNF
VHHEKDRIKELRQEIQSLAALTGLEIGEFRKIVHSVQKGEREARQAKKEMVEANLRLVIS
IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART
IRIPVHMIETINKIVRTSRQMLNEIGREPTPEELAEKLGMPLEKVRKVLKIAKEPLSLET
PVGDEEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNT
DHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDN
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atggccaccaaggcaaagacgctgcagaccaaggatagcaaggacgacaaggccgtcgac
gcaccggagaaggaagctgctgacgccccctcgccgttgctcgacctgtcggacgcagcc
gtcaagaagatgatcaagcaggccaagaagcgcggcttcgtcaccttcgatcagctcaac
gaagtacttccctccgacaccacctcgccggaacagatcgaagacatcatgtcgatgctg
tcggacatgggcatcaatgtgtcggagtccgacgacaccgacaatgaggaagaggagacc
aaggaggaggccgacgacgagcccgataccgatctcgtcgaagtcaccgccaaggccgtc
accgaaaccaagaagtccgagccgggcgagcgtaccgacgatccggtgcggatgtatctg
cgcgagatgggcacggtcgagctgttgtcgcgcgagggcgaaatcgccatcgccaagcgc
atcgaggccggccgcgaggcgatgatcgccggactctgcgaaagcccgctgacgttccag
gccatcatcatctggcgcgacgagctcaacgaaggcaagatcttcctgcgcgacatcatc
gacctggaagcgacctatgccgggcccgacgccaagaacaacatgaacccggcgctggcc
gcccccgagggcgaaaccagcgaggaccccgacgccgtcgcggccccgccggcggcgccg
ccgcagccgaccccgttccgcgccggcgccccgcgcccggcgcccgccgccacgcccggc
gaagagggcaaggacccggccgaatccgccgccgaaggcgacatggacgacgacgagttc
gaaaaccagatgtcgctcgccgccatcgaggccgagctgaagccgaaagtggtcgagact
ttcgacaagatcgccgagaactacaagaagctgcggcgtcttcaagaacaggacatctcc
aaccagctgcagaacgagacgctgtcgccggcccaggagcgcaaatacaagaagctgaag
gacgagatcatcgtcgaggtgaagtcgctgcggctcaatcaggcccgtatcgattccttg
gtcgagcagctctacgacatcaacaagaagctggtctcgttcgaaggccggctgttgcgc
cttggcgattcccacggcgtcgcccgcgaagactttttgcgcaattatcaaggctcggag
ctcgatccgcgctggctcaaccgcgtctcgaaactctcggcaaaaggctggaagaatttc
gtccatcacgagaaggaccgcatcaaggaactgcgccaggagattcagtctctcgcggcc
ttgaccgggctcgagatcggcgaattccgcaagatcgtgcacagcgtgcagaagggcgag
cgcgaggcgcgccaggccaagaaggaaatggtcgaagccaacctccgcttggtgatctcg
atcgcgaaaaaatacaccaaccgcggcctgcagttcctcgatctgatccaggaaggcaat
atcggcctgatgaaggcggtcgataaattcgagtatcgccgcggctacaaattctcgacc
tacgccacctggtggatccggcaggcgatcacccgctcgatcgccgaccaggcccgcacc
atccgcattcccgtgcacatgatcgagaccatcaacaagatcgtgcgcaccagccggcag
atgctgaacgagatcggccgcgagccgacgccagaggagctcgccgaaaagctcggcatg
ccgctggagaaggtccgcaaggttttgaagatcgccaaggagcctttgtcgctcgaaacc
ccggtgggcgacgaggaagacagccatctcggcgatttcatcgaggacaagaacgcggtg
ctgccgatcgacgccgcgatccagtccaatctgcgcgaaaccaccacgcgcgtcttggcc
tcgctgacgccgcgcgaagaacgcgtgctgcgcatgcgcttcggcatcggcatgaacacc
gaccacacgctggaagaagtcggccagcagttttcggtgacgcgtgagcgtattcgtcag
atcgaggcgaaggcgctaaggaagctgaagcatccgtcgaggtcgaggaagctcaggagc
ttcttggataactaa
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