Rhizobium phaseoli: AMC79_CH03318
Help
Entry
AMC79_CH03318 CDS
T04590
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpha
Rhizobium phaseoli
Pathway
rpha03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpha00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AMC79_CH03318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpha03019
]
AMC79_CH03318
Enzymes [BR:
rpha01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AMC79_CH03318
Messenger RNA biogenesis [BR:
rpha03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AMC79_CH03318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
Helicase_RecD
AAA_22
Flavi_DEAD
Snf7
Motif
Other DBs
NCBI-ProteinID:
ANL99080
LinkDB
All DBs
Position
3360329..3362005
Genome browser
AA seq
558 aa
AA seq
DB search
MVRSGHSRCGAPKGYALTNFESLGVSKPIVATLFQLGIETPTPIQEQAIPLLLQGRDLIG
LAQTGTGKTAAFGLPLIEKLLADERRPDNRTTRTLILAPTRELVNQIADNLKKFIRKSPL
RINVVVGGVSINKQQLQLEKGTDVLVATPGRLLDLVNRRAITLTTVRYLVLDEADQMLDL
GFVHDLRKIAKLVPKKRQTMLFSATMPKAIADLAGEYLVDPVKVEVTPPGKAADKVEQYV
HFVAGKNDKTELLRKSLTENPDGRAIVFLRTKHGAEKLMKHLDNIGYSVASIHGNKSQGQ
RERALKAFRDGSIKTLIATDVAARGIDIPAVSHVYNYDLPEVPDAYVHRIGRTARAGRDG
IAIAFCAPDEAKLLRDIERLMGIDIAVASGEPPANISNSGPRRGNGNGNNRNRGGGQGRE
GQGRGEGRGDANRSEHRGSRQERRPRPERTSRNEDFRGQRRGEATPDLGPDNDLVSTSDF
RPSAKPQRPAHHGAHANGEPSGHHRGNNRHAHGRPARKHGEDRGQHQAQGGEPRREGNGG
NRRGGSGSRNGGQRRERA
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
atggtgcgttccggccatagtcgttgtggcgccccgaaaggttatgccttgactaatttt
gaatcgcttggtgtctccaagccgatcgtcgccaccttgttccagctcggcatcgaaacg
ccgacgccgatccaagaacaggccatcccccttctcctccagggccgagacctgatcggt
cttgcccagaccggcaccggcaagaccgccgccttcggcctgccgctcatcgaaaagctg
cttgccgacgagcgtcgccccgacaaccgcacgacgcggacgctgatcctggcgccgacc
cgcgaactggtgaaccagatcgccgacaacctgaagaaattcatccgcaagtcgccgctg
cgcatcaacgtcgtcgtcggcggcgtctcgatcaacaagcagcagctgcagctggaaaaa
ggcaccgatgtgctggtcgccacgcccggccgcctacttgaccttgtcaatcgtcgcgcc
atcaccctgaccacggtgcgctatctcgtccttgatgaagccgaccagatgctcgacctc
ggcttcgtgcatgatctgcgcaagatcgccaagctggtgccgaagaagcgtcagaccatg
ctgttttcggccaccatgccgaaggcgatcgccgatctcgccggcgaatatctcgtcgat
cccgtcaaggtcgaagtcacgcctccgggcaaggctgccgacaaggtcgagcagtatgtc
catttcgtcgccggcaagaacgacaagaccgaactgctgcgcaagtcgctgaccgaaaac
ccggacggccgcgccatcgtcttcctgcgcaccaagcacggtgccgagaagctgatgaag
cacctcgacaatattggctattccgtcgcctcgatccacggcaacaagagccagggccag
cgcgagcgggcgctcaaagccttccgtgatggcagcatcaagacgctgattgccaccgac
gttgccgcccgcggcatcgacatcccggccgtcagccacgtctacaactacgatctgcct
gaggtgcccgacgcctatgtccatcgcatcggccgcaccgcgcgcgccggccgcgacggc
atcgcgatcgccttctgcgcccccgacgaagccaagctgctgcgtgacatcgagcgcctg
atgggcatcgacatcgccgtcgcaagtggcgaaccgccggccaatatcagcaatagcggc
ccccgccgcggcaacggcaatggcaacaaccgcaaccgcggtggcggccagggtcgcgaa
ggccaaggtcgcggcgaaggccgtggcgatgcgaaccgctcggagcatcgcggcagccgc
caggaacgccgcccgcgtcccgaacgcacaagccgcaacgaggatttccgcggccagcgc
cgcggcgaagcgaccccggatctcggccccgacaatgatctggtttcgacctccgacttc
cgcccctcggcaaagccgcagcgtcccgcccatcacggcgcccacgccaatggcgaaccg
agcggacatcaccgtggcaataaccgtcacgcccacggccgcccggcccgcaagcacggc
gaagaccgcggccagcaccaggcccagggcggcgaaccgcgccgcgagggcaatggcggc
aaccgccgcggcggttccggctcccgcaatggcggccagcgccgcgaacgcgcctga
DBGET
integrated database retrieval system
