Rhizobium phaseoli: AMC79_PB00198
Help
Entry
AMC79_PB00198 CDS
T04590
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpha
Rhizobium phaseoli
Pathway
rpha03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMC79_PB00198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpha03400
]
AMC79_PB00198
Enzymes [BR:
rpha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AMC79_PB00198
DNA repair and recombination proteins [BR:
rpha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMC79_PB00198
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ANM00613
LinkDB
All DBs
Position
pRphaN261b:217336..218403
Genome browser
AA seq
355 aa
AA seq
DB search
MTRPRQPSAPLLRESSSSIQSRPVRRRDPAQPSLPFDAMPSRVEPCLALLKQTVPQGPDW
IYEVKWDGYRLAIHIEPKRIRILTRGGHDWTHRFPTIAAGARALGVSSCILDGEAVVLDE
EGRSDFGALQRSLGGRGGKRISTESVFCAFDLLYLDGHDLTRTELSVRRHLLQDLIPGTD
EGAIRFSQELDLTGEDLLEHACHLGLEGIIAKRGDRPYRSGRLGDWQKIKCVQSDSFMIV
GYEESASTRGGLGSLLLAGRKGQDWIYVGSVGTGFNREEAEYLRKTLNRLQTNKPVVPLK
GKRLVFSQPTLIAEIEFRGWTREGSLRHASYKGLREIQDNAAVFDMTDATAITEN
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgaccagaccacggcagccctccgccccgcttcttcgcgagtccagctcttcgatacaa
tctcgacctgtccgtcggcgtgatcccgcccagccaagcctgccgttcgatgccatgcca
tccagagtggagccctgcctggcgctgctgaagcaaacggtgccgcaagggccggattgg
atttatgaggtgaagtgggacggctaccgattggcgatccacatcgagccaaagcgcatt
cgcatcctcacccgcggcggccatgactggacccaccgattcccaacgatcgccgcagga
gcaagagcacttggtgtatcgagctgcattctcgacggagaagccgttgttctcgatgaa
gagggtcgctccgactttggagcgttgcaacgctcgctcggcggcaggggcggcaagcgg
atctcaaccgaatccgtcttctgtgccttcgatctgttgtacctcgatggtcacgacctg
acccgaaccgaactctcggtccgccgtcaccttttgcaggatctgattcccgggaccgac
gagggcgccattcggttctcgcaagaactggatttgactggcgaggatctgctcgagcac
gcctgccatctgggtctggaaggcattattgcgaagcgcggggaccgcccttatcggagt
ggtcgtctcggggactggcagaagatcaagtgcgttcagagcgacagtttcatgatcgtc
ggttacgaggaatccgccagcacccgcggcgggctcggcagtcttttgcttgcgggtcgc
aaggggcaagactggatctatgtcggatcggtcggcacggggttcaatcgggaggaggcg
gagtatttgcgcaagacgttgaaccgtctccaaacgaacaaacctgtcgtgccgctcaaa
ggaaagcgccttgttttttcccagccgaccctcatcgccgaaatcgagtttcgcggctgg
acgcgcgagggcagcctccgccacgcttcatataaaggccttcgtgagatacaggataat
gctgccgtcttcgatatgactgacgccactgcaatcaccgaaaattaa
DBGET
integrated database retrieval system
