Rhizobium phaseoli: AMC79_PB00200
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Entry
AMC79_PB00200 CDS
T04590
Name
(GenBank) ATP-dependent DNA ligase protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpha
Rhizobium phaseoli
Pathway
rpha03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMC79_PB00200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpha03400
]
AMC79_PB00200
Enzymes [BR:
rpha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AMC79_PB00200
DNA repair and recombination proteins [BR:
rpha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMC79_PB00200
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANM00615
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Position
pRphaN261b:complement(219840..222485)
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AA seq
881 aa
AA seq
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MASDKLSSYRSKRDFQKTAEPSGERRIKKSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGRASPE
QALLKGDFKFTLHGERLHGSFVLVRMRSDRERSKRTNWLLIKHHDEFSVEENGAAILEGN
ATSVASGRSMEMIAAGKGRKPKPFMVEGGKVEANAVWDSNHGLAADERREAKGGRRSSTA
TAVDLPSFIAPQLCEKRERPPGGDGWLHEIKFDGYRIQMRVLGGEATLKTRKGLDWTAKY
PEIAQAASALPDCILDGEICALDEHGAPDFAALQAALSEGKTGNLVYFAFDLLYDGGEDY
RLKPLIERKARLQELLTEADEGPRIRFVEHFTGGGDAVLRSACKLSLEGIVSKQADAAYQ
SGRTESWAKSKCRAGHEVVIGAYAKTNGKFRSLLVGVFSDDNFVYVGRVGTGYGAKKVET
LLPKLKALETAKSPFTGTGAPKKQADVVWVKPELVAEIEFEGWTADGLVRQAAFKGLRQD
KPAKEVEAERSRTSAKAEVAEPAPRAEPRSTRRRGQKADVMGVLISNPDKPLWPDANDGA
PVTKEELARYYEAVGDWMIDHLKGRPCSIIRAPDGMGGEQFFQRHAMPGQSNLLELVKVF
GDKKPYLQIDRIEGLAAVAQIAAVELHPWNCEPGQPEVPGRLVFDLDPGPDVAFSTVVAA
AREMRDRLQDLGLISFCKTTGGKGLHVVTPLAVNKRKPLSWPEAKAFAHNLCQQMARSNP
DLYLIKMTKSLRGGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPKR
FTVRTVPALLSKSAAWKDYCEGQRPLEQAIKRLGRTGKHAA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgacaagctatcgagctatcgatcgaaacgcgattttcagaagaccgctgag
cccagcggtgagcggcgcatcaaaaagagcaaccgccgccgcttcgtcattcagaagcac
gatgcaacacggctgcactacgacctgcggctcgagctcgacggcgtgttcaagagctgg
gcagtcaccaagggcccatcgctcgatccgcacgataagcgcctggcggtcgaggtcgag
gaccatccactcgattatggcgatttcgaaggcacgattccgaaaggccagtatggcggc
ggcacggtcatgctgtgggatcgcggttattgggagccggagggacgggcgagccccgag
caagcccttctcaagggcgatttcaagttcacgcttcacggcgagcgcttgcacggaagc
ttcgtgctggtgcgcatgcgtagcgatcgcgagcgcagcaagcgtaccaactggctgttg
atcaagcaccatgacgagttctcggtggaggagaacggtgccgctatcctggagggcaac
gccacctcggtcgcttcgggccgcagcatggaaatgatcgcagccggcaaggggcgcaag
ccgaaacctttcatggttgaaggcggcaaggtcgaggccaacgccgtctgggacagcaat
cacggactggccgccgacgagcggcgggaggcgaaaggcggaaggcgcagcagcacggcg
acggcggttgatctgccgagtttcatcgcgccgcagctttgcgagaaacgggagcggccg
cctggcggggacggttggcttcatgagatcaaattcgatggatatcgcatccagatgcgg
gtgctcggcggcgaagcgacgttgaaaaccaggaaaggtctcgactggacggccaagtac
cccgaaatcgcccaggcggcgtcagcgcttccggattgtatcctcgatggcgagatctgc
gcgctcgacgagcatggtgcgccggacttcgccgcgctgcaggccgcactgtctgagggc
aagaccggcaatctcgtctacttcgccttcgatctgctctacgacggcggcgaggattat
cgtctgaagcccctcatcgagcgaaaggcgcggctgcaggaactcctcacggaggccgac
gaaggtcctcgcatccgcttcgtcgaacatttcaccggcggtggcgacgccgttctccgg
tcggcatgcaaactctcgctggaaggcatcgtgtcaaaacaggcagatgccgcttatcag
tccggtcgaacggaaagctgggcgaagtccaaatgccgtgccggacacgaggtggtcatc
ggcgcctatgccaagaccaacggcaagtttcgttcccttctggtcggcgttttcagcgac
gataactttgtttatgtcggccgtgtcgggaccggctacggcgccaagaaggtcgaaacg
ctgcttccgaaactgaaggcgctggagactgcgaagtcgccgttcactggaaccggcgct
ccgaagaagcaggctgacgtcgtctgggtgaagccagagcttgtcgcagagatcgaattc
gagggctggactgcggacggtcttgtccggcaggcagccttcaagggactgcgccaggat
aaaccggctaaggaggtcgaggcggaacgatcgcgaacatccgccaaagccgaggttgcg
gagccggctccgagggccgaaccgaggtcaacgcgccgcaggggtcagaaggccgatgtc
atgggcgtgctcatttccaatccggacaaaccattgtggccggatgccaatgatggcgcg
ccggtgacaaaggaagaactggcccgctattacgaggcggtcggcgactggatgatcgac
cacctgaagggcaggccctgctccatcatccgtgctccggatggaatgggtggcgagcag
tttttccagcgccatgcgatgccggggcaatccaacctgctcgaattggtcaaggtgttc
ggcgacaagaagccatatctgcagatcgatcgcatcgaaggccttgccgcggtcgcccag
atcgcggcggtcgagcttcatccgtggaactgcgaacccggtcaaccggaagtccctggt
cgtctggtattcgatctcgatcccgggcccgatgttgccttttccacggttgttgcggct
gcccgggaaatgcgcgaccggctgcaggacctcggattgatcagcttctgcaagacgacc
ggcggcaagggcctgcatgtggtgacgccacttgcagtcaacaagcgcaagccattgtcc
tggcctgaagcaaaggccttcgcgcacaacctctgccagcagatggcccggagcaacccc
gatctctacctgatcaaaatgaccaagagcctgcggggcggtcgcatttttcttgattac
ctgcgcaacgaccgcatggcgacagcggtggctccgctctcccctcgagcccgcccaggc
gccacggtgtcgatgcctttgacgtggacacaggtgaaatcagaccttgaccccaaaagg
tttacggttcggaccgtgcctgctttgttgtcgaagtcagccgcctggaaagattattgc
gaggggcagcgtccgctggagcaggccatcaagaggctcggccgcaccggcaagcatgcc
gcctga
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