Ruditapes philippinarum (Manila clam): 132722035
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Entry
132722035 CDS
T09557
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase BAP1-like isoform X1
KO
K08588
ubiquitin carboxyl-terminal hydrolase BAP1 [EC:
3.4.19.12
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
132722035
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rphi01002
]
132722035
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rphi04121
]
132722035
03036 Chromosome and associated proteins [BR:
rphi03036
]
132722035
Enzymes [BR:
rphi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
132722035
Peptidases and inhibitors [BR:
rphi01002
]
Cysteine peptidases
Family C12: ubiquitin C-terminal hydrolase family
132722035
Ubiquitin system [BR:
rphi04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UCH
132722035
Chromosome and associated proteins [BR:
rphi03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
PR-DUB complex
132722035
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Peptidase_C12
UCH_C
Motif
Other DBs
NCBI-GeneID:
132722035
NCBI-ProteinID:
XP_060562414
LinkDB
All DBs
Position
Unknown
AA seq
603 aa
AA seq
DB search
MNKGWLELESDPGLFTLLLQDFGVKGVQVEEIYDLQKAFEGTTYGFIFLFRWIEERRSRR
KTITEDESFVTDDNIVNSIFFAQQMIPNSCATHALLSVLLNCEKVNLGQTLSELKSYSKH
MNPENKGYAIGNIPELARAHNSHARRENSHLPEKQQGMTIRTMEAFHFVSYVPIHGHLFE
LDGLKPYPIDHGPWESNEDWTEKFRRVISERLGMATGGEPYHDIRFNLMAVVPDKVSLYE
HKLSTLKTNRQIVLEALQQLLGSPPKMVKVTNPNITTAEKEKCLAVVKKHGPVNVNIAVP
MEIDEPDLTKRDLESGSREMTTAVKSEVIDLTDDDLRTTTTTTTEEVIKTGLINDISRVK
LESEIKTELTLKSDVGNKNVTNCARGDVQTSVNEGMEVQISVASDADGVSTIVPTTAATT
DVTKPLTIETKFSASPGPSSESTDTASEVGSCFSSPSSSTMSTSAQNSPNVAGGERITDG
GKEAESSSPVKSKTKFNSQQGFRPKDLIALLKNVENEIKLCETKLQDEEEKIKKYKIDNC
RRTHNYDQFLCTFLSMLAEQGHLAELVQQHSFIKKRVPGHIGSKLSKLSQAAKKKQTKAK
RRR
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaagggtggcttgaacttgaaagcgatccaggattgttcactttgcttttacaa
gactttggggtcaagggagtacaagttgaggaaatatatgatcttcaaaaagcttttgaa
gggacaacatatgggttcatttttctttttcgttggattgaagagagacgatccaggagg
aaaacaataacagaggatgaaagttttgtcacagatgacaacattgtgaacagtattttc
tttgctcaacagatgattccaaattcttgtgctacgcatgcattacttagtgtcttattg
aactgtgaaaaagtgaatctcggacaaacgctgtcagaacttaaatcatacagcaaacat
atgaacccagagaataaaggttatgcaataggtaacataccagagttagcacgggctcat
aacagtcatgcaagacgtgagaattctcatttgccagagaagcagcaaggtatgaccatc
aggactatggaagcttttcattttgttagttatgtaccgattcatggacacttgtttgaa
ctagatggtctcaaaccatatcccatagatcatggtccgtgggagagtaatgaagactgg
actgaaaaatttcgccgtgtcatctctgaaagacttggaatggcaacaggaggagagcca
tatcatgatataagatttaatttaatggctgtggtaccagacaaagtgagcctgtatgaa
cacaagttgagcacattaaagaccaacagacagattgtcctggaagcccttcaacagctt
ttaggaagcccgcccaagatggttaaagtcaccaatcccaacattaccacagctgagaag
gagaaatgtctggctgttgttaaaaaacatgggcctgtcaatgttaacatagctgttcct
atggagatagatgaacctgacctgacaaaaagggatttagagagtggcagcagggagatg
acaacagcagtgaaatcagaggtcattgacctcacagatgacgaccttagaactacaaca
acaacaacaacggaggaagtgatcaaaactggtttaatcaatgatattagtcgagttaaa
cttgagtcggaaataaaaacagaattgactttaaaaagtgatgtaggaaataaaaacgtg
acaaattgtgcacgtggggatgtacaaacgtcggtgaacgaaggaatggaagttcagatc
tcagtagcatcagatgccgacggtgtgtcgactatagttccgacaacagcagcgactaca
gacgtcacaaaacctcttactatagaaacaaaattttctgcctcgcccggtcccagcagt
gaaagtactgatacagcttcagaggtggggagctgctttagttcacctagtagtagcact
atgagtacgtctgcacaaaacagtcctaatgtagctggtggggaaagaataactgatgga
ggaaaagaagcagagagttcatcacctgtaaagtcaaaaacaaagtttaacagtcaacaa
ggtttcaggcctaaggatttgatagccctgttgaaaaatgttgaaaatgagatcaaatta
tgcgagaccaaactacaagatgaagaagaaaagataaaaaagtacaagattgacaactgc
cgccgcacgcacaactacgatcagttcctgtgtacgttcctttcaatgttagcagaacaa
ggtcaccttgcggaacttgtgcaacaacatagttttataaagaaacgagttcccggacat
atcggtagtaaattgtccaagctgtctcaggctgcaaagaaaaaacaaacaaaagcaaag
agaaggagatag
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