Ruditapes philippinarum (Manila clam): 132722614
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Entry
132722614 CDS
T09557
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 47-like
KO
K11857
ubiquitin carboxyl-terminal hydrolase 47 [EC:
3.4.19.12
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rphi01002
]
132722614
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rphi04121
]
132722614
Enzymes [BR:
rphi01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
132722614
Peptidases and inhibitors [BR:
rphi01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
132722614
Ubiquitin system [BR:
rphi04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
132722614
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
USP47_C
UCH
UCH_1
Motif
Other DBs
NCBI-GeneID:
132722614
NCBI-ProteinID:
XP_060563121
LinkDB
All DBs
Position
Unknown
AA seq
1172 aa
AA seq
DB search
MFDALEVTWRGTDQEKLVNHLYQGKMKDYVKCLECGNESARIDTYLDIPLVIRPFGSTTA
YKSVTEALEAFVQPEILEGRDQYFCEKCNKKCDAHKGLKFLEFPYMLTLQMKRFDFDYAT
MHRIKLNDKMTFPEVLNLNYLIDGVSEESTGEEEAPPVTDSTGKDQSIDEGIEMEVSSSA
GSINEESSPSNDTLNDRNAQHSNVKGPYEYELFSIMIHSGSAAGGHYYAYIKCLSDGQWY
SFNDQHVSKITYDDIRKTYGGSSTTRGYYSSSYASSANAYMLMYRKIDKEKNIDFMSGEE
FPDHVKVELRKLNDKEEADRKQKEMDKSTCKIKIFCVHPSRKKKLDHKLEIHKEKTLSEA
TDLAYKIFELEDCVTRDCCRIVKYDEYQDSLECSFDNSDDVPMETLLNGVKQSYSFDLLL
ETRRPEQKFQEYKPGGVTVKVYVADLEKDIIIEPPATVRAYLVQTVQEFKTLVAQVLALN
EEDMRCVLERFHNDLKLLHMPNKTLKSEGFFKTNKVYIELNASEEDRNTQFDKSRFYNLL
DRYQNTINIQVSLPSLAEVADYKAHSCARENSPLGQDSAVESGVNSSANSVDNGSDMCNH
EQRLFRSRENLASRDSFCQDLDTEMRNLNLQSQLSQSDPNLYGSSKHSEGVSKGEILNSL
QNRGSRSSLECQDSRSCSQSTQSTSTSAEFSLGNVNSVCEGNLESPDEVLTSHSDKDCDL
NATFSEKGQCDDLEGGFSDHKGNLGSGEPVEHVFTDSLPSENLPRPTNSPEDEDISDSNI
TGTSYWERQGRRQATTGWDESASSTSACFDSMSNSHGDGDSIEEKRFFQAELCETDPDHR
SLSVYVDKRITLGCFKGELESYVGVSASNFKVYRVYTNNQEFESIRLTETLSFLEDGRIN
IKLGRALKNGEYRVKVFQLLVNESEPSKFLLDTIFARGMTVLESKKMILPEIKQEHNLDI
PLDRCRLRKKTWKNPGTIYVDKQVYEEEIPIYPNWEVFLEILEEPEQMLSSAQLAVYLRR
WFPSKYELGPFEEVVITEQTVEELKKKISELHGMNIEDIEIAKGRGTFPYDVSVLEIHTD
LDWNPVVQALGMWPLYICDDGCLVYYRDKTEKLGELSDEHKKEIEAKENTRLSKSSHRVT
CSPRKERALKIYTEEPSPNNSLSASNASPDLD
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatgccctagaagtaacgtggcgtggcactgaccaggaaaaacttgtcaatcac
ctgtaccagggcaaaatgaaagattatgtcaaatgtttagagtgtggaaatgagagtgct
agaatagacacataccttgatatacctctagtcatacgaccttttggatctacaactgcc
tataaaagtgttacagaggcattggaagcatttgttcagccagagattctagaaggacga
gatcagtatttctgtgaaaaatgtaataaaaaatgtgatgcccataagggcttaaagttt
ttagagtttccatacatgttgacgttacaaatgaagaggtttgattttgactatgctaca
atgcacaggatcaagcttaatgataaaatgacatttcctgaggtgctaaatctgaactat
ttaattgatggtgtttctgaggaaagtacaggggaagaggaggcccctcctgtcactgac
agtacgggaaaagaccaatcaatagatgaaggtatagagatggaggtgtccagctcggct
ggatcaatcaatgaagaatctagtccctctaatgacactctcaatgacagaaatgcccag
cattcaaatgtcaagggtccatatgaatatgagttgttttctataatgatacactctggt
agtgcagcaggtggacattactatgcctatatcaaatgtttgagtgatggtcaatggtac
agctttaatgatcaacatgtctctaaaataacctatgatgatataagaaagacatatggg
ggaagttctacaaccaggggatattattcttcatcatatgctagctctgccaatgcttac
atgttaatgtacaggaaaattgataaagaaaaaaatatagattttatgagtggggaagaa
tttcctgatcatgtgaaagttgagcttagaaaattaaatgataaggaagaggcagacagg
aaacaaaaagaaatggacaagtcaacttgcaagataaagattttctgtgtacatccttct
cggaagaagaagctggaccataaattagagattcacaaagaaaaaaccctgtcagaggct
acagatctagcatacaagatatttgagttggaagactgtgtgactagagactgttgtagg
attgtcaaatatgatgaatatcaagattcacttgagtgttcttttgacaattctgatgat
gttcccatggaaaccttactgaatggagtaaaacagagctacagttttgatttacttcta
gaaactagaagacctgagcagaaatttcaggaatataaacctggaggtgtaacagtaaag
gtatatgtggcagatttggaaaaggatataataatagagcctccagccactgtgagggca
tatctggtacaaacagtgcaagagttcaaaacccttgttgcccaagttctggcattgaat
gaagaagatatgaggtgtgttctggagcgattccacaacgatcttaaacttcttcatatg
cctaataaaactttgaaaagtgaaggattttttaagacaaacaaggtttatatagagtta
aatgccagtgaggaagatcggaatactcagtttgataaaagtcgtttctacaacttgtta
gatagataccaaaatacaatcaatattcaagtcagcttgccgtcactggctgaggtggct
gactataaagcacactcgtgcgcacgtgaaaattctcctctaggtcaagactctgctgtt
gaaagtggtgttaatagttcagcgaatagtgttgataatggaagtgatatgtgcaatcat
gaacaacgtttatttagatcaagagaaaatctagctagcagagattctttctgtcaggac
ttggacactgaaatgagaaatcttaatctacaatcacaattaagtcaaagtgatccaaat
ctatatggaagtagtaaacactctgaaggggtttcaaaaggtgaaattttaaacagttta
caaaataggggttcaaggtcgtcccttgaatgtcaggactcaaggtcgtgtagtcaatcc
actcaatctacaagtacgagtgctgaattcagtttagggaatgtgaattctgtttgtgaa
ggaaacttagaatcacccgatgaagtgttaacatcccatagtgataaagattgtgacctt
aatgcgacctttagtgaaaaaggtcaatgtgatgaccttgaaggtggattcagtgatcat
aagggaaatttaggtagtggtgaacctgttgaacatgtgtttacggattctttacctagt
gaaaatttgccaagacctacaaattctccagaagatgaagacatatcagactcaaatatt
accggaacatcgtactgggagcgtcaaggtcggaggcaggctacgacaggctgggatgag
tcagctagcagcacctcggcttgttttgattcaatgagtaacagtcatggtgatggggat
agcatagaagaaaaaagattttttcaggctgagctctgtgaaacagaccctgatcataga
agtttgtcagtatatgtagataagaggatcactcttggctgttttaagggggagctagaa
tcctatgtgggcgtgtctgcaagtaacttcaaggtgtacagagtatatacaaacaatcag
gagtttgagagtataagactcacagagacactgtccttcctagaagatggaaggattaat
atcaaactgggtagagcattaaagaatggagaatatagagtcaaagtgtttcaacttcta
gtcaatgaatccgagccgtccaagtttttattggacacaatatttgcacgtgggatgaca
gttttagagtccaagaagatgatccttccagagataaaacaagaacataatttagatata
ccacttgataggtgtcggctgaggaagaagacatggaagaatccaggtactatctatgtt
gacaagcaggtatatgaggaagaaataccaatctacccaaactgggaagtctttttggag
attcttgaagaaccagagcagatgttgtcgtctgctcaactagcagtttatctgagaaga
tggttcccatcaaaatacgagctgggtccattcgaggaggtggtaataactgaacagact
gtcgaggaactgaagaaaaagatatctgagttacatggtatgaacattgaagatattgaa
attgcaaagggcagagggacgttcccatatgatgtatcagtactagagattcatacagat
ttagactggaaccctgttgtacaagctctcggcatgtggccgttgtatatatgtgatgac
ggctgtttagtatactatcgggataaaacagaaaaattgggagaattgagtgatgaacac
aagaaggaaattgaagctaaagaaaatacaaggttatccaagtcttcacatagagttacc
tgcagtccaaggaaagagagagcactgaagatttacacggaggaaccttctcctaacaat
agcttgtcggcatcaaatgcttcccctgaccttgattaa
DBGET
integrated database retrieval system
