KEGG   Ruditapes philippinarum (Manila clam): 132753247
Entry
132753247         CDS       T09557                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi03030  DNA replication
rphi03410  Base excision repair
rphi03420  Nucleotide excision repair
rphi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    132753247
   03410 Base excision repair
    132753247
   03420 Nucleotide excision repair
    132753247
   03430 Mismatch repair
    132753247
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rphi03032]
    132753247
   03400 DNA repair and recombination proteins [BR:rphi03400]
    132753247
Enzymes [BR:rphi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     132753247
    6.5.1.6  DNA ligase (ATP or NAD+)
     132753247
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     132753247
DNA replication proteins [BR:rphi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    132753247
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     132753247
DNA repair and recombination proteins [BR:rphi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     132753247
   NER (nucleotide excision repair)
    Other NER factors
     132753247
   MMR (mismatch excision repair)
    Other MMR factors
     132753247
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 132753247
NCBI-ProteinID: XP_060599669
LinkDB
Position
Unknown
AA seq 1046 aa
MINFRLFCSGKFIYTKHCYLLKPNTVMQRSIASFFSSAPKKDDSKSKSSKDTEKSPVKKV
EKSPLKQKNVSPSKLLDDSPIKAPARKRARILESDDEEENVQVSDKEKSSEKTVEQRLEK
IVEEKQKTKDDTNGESQDSGKGLQSPERSAAFTPVKSPFPARKTARKSIGGSARKKIPST
IAERQEEDMITEETEKVDTPQETVTKDENKSAELETKAEDVKTETDEVTNEVKIEKTEDK
EDVKDSKDEDTAEDGNSGEEADEAPRGHKKKSVPGKGVVTPKGQKRKSSKKETSPKEKKV
KSETPKSVKKEKEVKPKVSKKGKAPVNGVFSPKSSSKDKESKDVESEKSEDKSVKSEVES
EAKPVKQETEKKSGVNPFASMMGKKTEPNSTYNPTKSNYHPIDDACWKHGEKVPYLALAK
TFEAIENVSARLKIIEILSNFFRSVIVLTPDELLPCVYLCLNKLAPAYEGVELGIGETVL
MKAIAQSTGRSMEKIKVDAQEKGDLGIVAENSRSTQRTMFAPANLTIPAVFTKLKEIATM
TGNSVMTKKIDKIKGMFVACRQSEARYLIRSLGGKLRIGLAEQSVLTALGNAIYLTPPGQ
EYPPEIINAGKGKSAESLKQKMEESALVIKTTYCECPNYGAIIPCLLEHGIEELPNRCKL
TPGIPLKPMLAHPTKGISEVLSRFENNDFTCEYKYDGERAQIHLLENGKIQIYSRNSEDN
TSKYPDIISRLPKCLAEDVKSCVLDTEAVAWDAEKKQILPFQVLTTRKRKDADAAEIKVQ
VCVYAFDLLYLNGESLVRQPFRRRRELLRSSFKEIDGEFTFATSMISSNTEEISEFLEES
IKGNCEGLMVKTLDVDATYEIAKRSHNWLKVKKDYLEGMGDTLDVLVMGGYLGTGKRTGR
YGGFLLACYDDENEEYQCICKIGTGFKDEDLEKHTTFFKEHVIEKPKSYYKWDKSVECDH
WFEPVQVWEIKAADLSVSPVHKAAAGMVDPEKGISLRFPRFLRIRDDKKPEEATSASQVA
DMYRGQSQIQNQSKTKSKVEEEEDFY
NT seq 3141 nt   +upstreamnt  +downstreamnt
atgataaacttccgcttattttgtagcgggaaatttatttacactaaacattgttacctt
ttaaaaccaaacacagtcatgcagcggtctatagcgtcttttttctcatcagctccaaag
aaagatgactcaaaatcaaaaagcagcaaagatactgagaaatctcctgtaaagaaggtt
gaaaaatctccgctgaaacagaaaaatgtatcgccatctaagctgctagatgactctccg
ataaaagctccggcgagaaagcgagctcgtatcttagaaagtgatgatgaggaggagaat
gtacaagtgtccgacaaggagaaatctagcgagaagacagttgaacagagactagaaaaa
attgtcgaagaaaagcaaaaaacaaaggatgatacaaatggggaaagccaagattctggg
aaaggtcttcagtctccagaacgttcagcagcatttacaccagtcaaatctccattccca
gcacgtaaaacagctcgaaagagcataggtggcagtgctagaaagaagataccaagtact
atagcagagagacaggaagaagatatgatcactgaagaaacagagaaagtcgatacacct
caggaaactgtaacaaaagatgaaaacaagtctgcagagcttgagacaaaggcggaggat
gtaaaaactgaaacagatgaagtaactaatgaggttaagatagaaaagactgaggacaag
gaagatgtgaaggacagtaaagatgaagatacagctgaagatgggaactctggagaggag
gccgatgaggcaccaaggggacacaagaagaaaagtgtacctgggaaaggtgtagttaca
ccgaaaggtcaaaagagaaaatctagtaaaaaggaaaccagtcctaaagaaaagaaagta
aaaagtgaaactcctaagtcagtgaagaaagaaaaagaagtaaagccgaaagtttcaaaa
aaggggaaagcaccagtgaatggcgtcttttcaccaaagtcaagttccaaggataaggaa
tctaaagatgtagaaagtgaaaagtcagaggacaagagtgttaaatctgaggttgaaagt
gaggctaaacctgtaaaacaagagacggagaagaaaagtggtgtgaatccatttgcaagc
atgatgggaaagaagacggagccaaattcaacctacaaccccacaaaatcaaactaccac
ccaatagatgatgcttgttggaaacatggtgaaaaggtgccgtatctagcattagcgaag
acgtttgaagccatagaaaacgtgtctgcaagattaaagattatagagattttaagcaac
tttttccgttcagtgatagtgttaacaccggatgagctattaccatgtgtgtacctgtgt
ttgaacaagctagcaccggcatatgaaggtgttgaacttggtataggtgaaaccgttctc
atgaaagcaattgctcaaagtacaggtagaagtatggagaaaataaaggttgatgcacag
gaaaaaggagatcttggtattgttgctgagaacagtagaagcacacagaggacaatgttt
gccccagcaaatctaacaattccagcagtgttcaccaaactaaaggagatagccaccatg
acaggcaactctgtgatgacaaagaagatagataagattaagggtatgtttgtggcatgc
cggcagtctgaggctcggtatctgatccgatcattgggcggcaagttgaggataggtctt
gctgaacagagtgtacttacggcccttggaaatgcaatatatcttactccacctggtcaa
gagtacccaccagagataataaatgcagggaagggaaagagtgctgagtcgttaaaacag
aaaatggaggagtctgctctagtcattaaaactacatactgtgaatgtccaaactatgga
gctataattccttgtttattggagcatggtattgaagaattaccaaatagatgtaaatta
actccaggtattccattaaaaccgatgttggcacatcctacaaaaggtattagtgaggtg
ttatctcggtttgagaacaatgattttacatgtgaatacaagtatgatggtgaacgggct
cagatccatttgttagaaaatggtaagatacaaatttacagtagaaactcggaggacaac
accagtaaatacccagatattatttcacgtctacctaaatgtctggcagaagatgtgaaa
tcatgtgttctagataccgaggcagttgcctgggatgctgaaaagaaacaaattctacct
ttccaggtccttactacaagaaaaagaaaggatgctgatgcagctgaaattaaggtacaa
gtttgtgtttatgcatttgacttgctgtatctgaatggggaatctcttgtacgtcaacct
ttccgacgtagacgtgaattactgaggtcatcgtttaaagaaatcgacggggaattcact
tttgctacctcaatgatttcatcaaatactgaggagatatcagagtttttagaagagtct
atcaaaggaaactgtgagggtttgatggtgaaaacactagatgtagatgccacatatgaa
atagcaaaacggtctcataactggctcaaggtgaagaaggattatttggaaggtatggga
gatacattagatgtactagtgatgggaggatatcttggtacagggaaacgtactggacga
tatggaggtttcctgttggcctgttatgatgatgaaaatgaggaatatcagtgtatatgc
aagattggtacaggatttaaggacgaggatttagaaaaacacacaacattcttcaaggaa
catgtgatagagaaacccaagtcctactataaatgggacaagtcagtggagtgtgaccac
tggtttgaaccggttcaggtgtgggagatcaaggcagccgatctgtctgtgtccccagta
cacaaggcagctgctggaatggttgatcctgagaaaggtatatcattgagatttccacgg
tttctacggatacgagatgacaagaaaccagaggaggcaacttcagcctcacaggtagca
gatatgtacagaggtcaatcacagatacagaatcaaagtaaaactaaatctaaagttgaa
gaggaggaggatttttactga

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