Ralstonia pickettii DTP0602: N234_37775
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Entry
N234_37775 CDS
T03172
Symbol
ligD
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpj
Ralstonia pickettii DTP0602
Pathway
rpj03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
N234_37775 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpj03400
]
N234_37775 (ligD)
Enzymes [BR:
rpj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
N234_37775 (ligD)
DNA repair and recombination proteins [BR:
rpj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
N234_37775 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-GeneID:
17107469
NCBI-ProteinID:
AGW95811
LinkDB
All DBs
Position
3:complement(708381..710861)
Genome browser
AA seq
826 aa
AA seq
DB search
MKTNADLKRYEKKRDFAITPEPSGRATNARKARSKLSFVIQKHWARRLHYDFRLELDGVL
LSWAVPKGPSYDPKEKRIAVHVEDHPLEYANFEGDIPRGQYGAGSVIVWDRGTWDPVGDP
RKGMAEGKILFDLHGVKLEGRWELVRIAKPGDKSEQWILFKKPDAWARPLAEFDVLTALP
DSVTSTPQTSQDESLPDEDLASASLSIDRAPRASLPAKLAPQLASLSPTVPTGEGWIIET
KFDGYRLLARIANGTVRLFTRAGHDWTAKFPSLASELESLDADEAWIDGEIVVLRNDVPD
FNALQSAIAARQDDEIVYFAFDVPYLNGRDLRAFRLSQRKELLAGILGSASERVRLSEAF
DAPPAKLFKAACGLGLEGLMFKRADAPYVSARTPTWLKAKCKLRQEFVVGGFSLRTGSRQ
EVGRLYLGVYEDGALRYTGGVGTGWDSSTAAALMRKLVSLEIESMPFDQYTKARRWGRGG
SETARWVKPSLVAEVEFSEWTAEGHVRHAIFKGLRSDLQAKSVRKEAIRASVAPQGVSSV
KVTNPDRVIDPTTGITKLDLVRYYESVASLMLPHLKDRPLSLVRAPEGIAGTMFFQKHTE
TSIPGLTELPRGRWPGHAPLLVANSVEAIVAAAQMNVVEFHTWNSIERRIDTPDRFILDL
DPGEGLEWSKLQEGALLVRTLLDEVGLRSWLKTSGGKGLHVVVPLSGRQNYEVVKDFSRA
AVQHLAATLPQRFIAKSGPPNRKGKIFVDYLRNGHGQTTAAAFSARARPGMGVSMPVSWD
DLPKLKSGAHWTIRDAREYLSFQRADPWADYWTTRQTLSAAIKRLC
NT seq
2481 nt
NT seq
+upstream
nt +downstream
nt
atgaagaccaacgccgacctgaagcgctacgagaaaaagcgcgatttcgccatcacgcct
gaaccgtcagggcgcgccacgaatgcccgcaaagccaggagcaagctgtccttcgtgatt
caaaagcactgggcacggcgactgcattacgattttcgccttgagcttgatggtgtgctc
ttgagttgggcggtgccaaaggggccgagctacgatcccaaggagaagcgaatcgctgtg
catgtcgaggaccatcccctggagtatgccaacttcgaaggagatatcccacggggacag
tacggcgccggctcagtcatcgtttgggaccggggtacctgggatccggtgggcgacccg
cgtaaaggcatggcggagggaaagatcctgttcgaccttcacggggtaaaactggaaggg
cggtgggagttggtgcgcatcgcaaagcccggtgacaagtcagagcaatggatcctgttt
aagaagcccgacgcatgggcacggcccctagccgagttcgatgtcctgacggcgctccca
gacagcgtcacgtcaacaccgcaaacaagccaggatgaatccttacccgacgaggatctc
gcttccgcgagcttgtcgatagatcgcgcaccgagggcatcattgcccgcgaagctcgcg
ccacagctcgcgtccctttctccaacggttccaacgggagaagggtggatcattgagacg
aagttcgatggatatcgcttgctggcgcgcatagcaaatggcaccgtaaggctgttcacc
cgggcagggcacgactggaccgcaaagtttccctctcttgcttctgagctggaatcactg
gatgcggatgaagcctggatagatggtgagatagtcgtccttcgcaacgatgtgcccgat
ttcaatgcattgcaaagcgcgattgctgcacgtcaagacgatgaaatcgtgtacttcgcg
tttgatgttccctacctgaacgggcgggacttgcgggcattccgcctttcccaacggaaa
gaactcctcgcgggaatcctggggagcgcttcggaacgagtccggctcagcgaagctttc
gatgcgccaccagccaagctcttcaaggcggcatgcggcctcggattggaaggcttgatg
ttcaagcgggcggatgcaccatacgtttccgccaggacgccgacatggctcaaagccaaa
tgcaagcttcggcaggagtttgtcgtcggtggcttctcccttcgcaccgggtcgaggcaa
gaggtagggaggttgtaccttggcgtgtatgaggatggtgcgctgcgctataccggcggt
gtcggtacggggtgggacagctcgaccgcggcagctctcatgcgaaagcttgtgtcgttg
gaaatcgaatccatgcccttcgatcagtacacaaaggcccggcgctggggcaggggcggt
tccgaaacggctcggtgggtgaagccgtcgcttgttgctgaggtggagttttccgaatgg
acagctgaaggacatgtgcgccatgccattttcaaggggctgcgttcggatctccaagct
aagtccgtgcgaaaggaggccatacgggcgtccgtcgcgccccagggcgtgtcgagcgtg
aaggtgacgaaccctgacagggtcattgacccgacgacaggcatcaccaagctggatctg
gttcgctactacgaaagcgtggcgagcctgatgcttccgcacctgaaggacaggccgctg
tcacttgtgcgggcgcctgaaggcattgccggtaccatgtttttccagaagcataccgag
acatcgataccaggattgacggaactgccgaggggccgctggccaggccacgcgcccttg
cttgtggccaactctgtcgaggcaatcgtcgcggcggcccaaatgaatgtcgtagagttc
catacgtggaattcaatagagcgtcgcatcgatacacccgaccgcttcattctcgatctt
gaccccggcgaaggacttgagtggtcgaagctgcaggagggagcgctactcgtgaggaca
cttctcgacgaagtgggcctgcgatcctggttgaagacaagcggcggcaaaggcctgcat
gtcgttgttccacttagcgggagacagaactacgaggtcgtaaaggacttttcgcgcgcc
gccgtgcagcatctggccgcgacgctaccgcagcgcttcatcgcgaagtccgggccgccc
aaccggaaaggcaagatattcgtggactacctgagaaacggccatgggcagacaacagca
gcagcgttctcagcgcgcgccaggccgggtatgggcgtctcgatgccggtctcctgggac
gaccttccgaagctgaagagcggtgctcactggaccatcagagacgcgcgtgaatacctc
agctttcagcgcgcagacccttgggcggattattggacaacgcgtcaaacgttgtccgcc
gcgataaagagactttgttag
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