Rickettsia peacockii: RPR_03955
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Entry
RPR_03955 CDS
T00907
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rpk
Rickettsia peacockii
Pathway
rpk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RPR_03955 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpk03021
]
RPR_03955 (rpoB)
03400 DNA repair and recombination proteins [BR:
rpk03400
]
RPR_03955 (rpoB)
Enzymes [BR:
rpk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RPR_03955 (rpoB)
Transcription machinery [BR:
rpk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RPR_03955 (rpoB)
DNA repair and recombination proteins [BR:
rpk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RPR_03955 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
Motif
Other DBs
NCBI-ProteinID:
ACR47489
UniProt:
C4K1N9
LinkDB
All DBs
Position
complement(663148..667269)
Genome browser
AA seq
1373 aa
AA seq
DB search
MVSLRDNIEAQPLSHNRRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNK
GLQSILNSIFPISDSSNIANLEFVKYEFDTTKYDVEECSQRSLSYAAPLKVTLRLSIWDI
DEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVH
SSGKLLYSARVIPYRGSWLDLEFDAKDVIYFRIDRKRKLYTTTLLRAIGMSTEEIIKFYY
NSVTYKLVKNKGWAVKFIPQHITAHRLTSDLVDADTGNILLKAGQKITPRLAKKYFGEGL
NNILVAHETLIGKYLSEDLRDPASDEVLAKIGEMITADMLNVINDLKIKNVNVLVINPQS
GPYIRNTLFADKNQDREAALCDIFRVLRPGEPVNIEAAESLFYNLFFDTERYDLSEVGRI
KMNSRLELNISEEVTVLTIDDIKNIVRVLVELKDGKGIIDDIDHLGNRRVRSVGELIENQ
FRIGLVRMEKSVIERMSAGDVDTVMPHDLVNSKILVAVVKEFFSTSQLSQFMDQTNPLSE
ITHKRRLSALGPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKDGCVTDEVVYLSAIEEGKYKIGQANSKINKDGKLQGEFINCRVEGGNF
VMVEPYEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTDAPFVGT
GVEGVVAKDSGASVLALHDGIVEQVDSNRIVIRILEQKVDGSPSVDIYNLLKFQKSNHNT
CINQKPLVKVGHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIV
KEDVFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYIGAEVQAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVNGTVVEVRVFSRRGVEKDQ
RAIAIEKQQIEKFAKDRDDELEIIEHFVFSWLEKLLVGQVIINGPKQATVGQTITTEMLK
GLSKGQFWQITVEDANVMNEIEQIKTHYDEKKEALDKRFATKVEKLQSGDDLPQGALKVV
KVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIG
QILETHLGWASINLAKKISTLVKEYKNKHIGIEQIKKFLIELYGENINSILERPEEEIIA
FCKKVSKGVHFATPVFDGAKVQDVKDMLKLAGQDPSGQVKLIDGRTGEYFDRLVTVGQKY
LLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTSS
NT seq
4122 nt
NT seq
+upstream
nt +downstream
nt
atggtttcattaagggataatatagaagcacaacccttgtcacataatagaagaataaga
aaaaatttcggtcacataaatttagtagcagatataccgaatttgattgaaattcaaaaa
aattcatatgagaaaaactttctacagttaaatattaaagattctgaaagaaaaaacaaa
ggtttacaatctatattaaactcaatttttcctatttcagattcctccaatattgctaat
ttagaatttgtaaaatatgaattcgatactacaaaatatgatgtagaagagtgcagtcaa
agaagtttaagttatgctgctcctcttaaagttactttaagattaagtatttgggatata
gatgaggataccggtactagagaaattaaagggattaaagagcaagaagtatatatgggt
gatatcccattaatgactaaaaacggtacttttattatcaacggtacggaaagagtagtt
gtatcacaaatgcatcgctcacctggtgtattcttttatcatgatgaaggaaaagtccac
tcttccggcaagcttttatattctgctcgtgttattccatatagaggatcttggcttgat
ttagaattcgacgctaaggatgttatttatttcaggattgatagaaaaagaaagctttat
actactactttgcttagagctataggtatgagtactgaagaaattataaaattttattat
aattcagtaacttataagcttgttaaaaataaaggttgggcggttaaatttatacctcag
catattactgcgcatcgtttaacaagtgatttagtagatgcagataccggaaatattcta
ctgaaagcaggacaaaaaattactccgcgtttggctaaaaaatattttggggaagggctt
aataatattttagtagctcatgaaactttaatcggcaaatatctatccgaagatttaaga
gatcctgcaagcgatgaagtattagcaaaaatcggtgaaatgattactgctgatatgcta
aatgttattaatgatcttaaaattaaaaatgttaacgtattagtaatcaatcctcaatcc
ggtccatatataaggaacaccttatttgctgataaaaatcaggatcgtgaggcagcatta
tgtgatattttcagagttctaagaccaggcgaacctgttaatatcgaagcggctgaaagc
ctgttttataatttattctttgatacggaaagatatgatctttcagaagtcgggcgaata
aaaatgaattctaggttagagctgaatatttctgaagaagttacggttttaacaattgat
gatattaaaaatatcgtaagagttttagtagagcttaaagacggtaaaggtatcatagac
gatattgatcatttaggtaatagaagggttagatcggtaggtgaattgatagaaaatcaa
tttagaataggtttagtccgaatggaaaaatctgtaattgaaaggatgtcggcaggtgat
gttgataccgtaatgcctcatgatttagtaaattctaaaattttagttgcagtagtaaaa
gaattttttagtacctcccaattatcccaatttatggatcaaacaaatccattatcggaa
ataactcataaaagaaggctgtcggcactcggtcccggaggtcttagtcgagatcgagca
ggttttgaggtgcgtgacgtacatcctactcattacggtcgtatttgtcctattgaaaca
cctgaaggtcagaatatcgggttaattaactctatggctacttatgctagaataaataaa
catggttttatagagagtccgtatagaagagttaaagatggatgtgtaaccgatgaagtg
gtatatctttctgctattgaagaaggtaaatacaaaatcggacaagcaaattctaaaatt
aataaagacggaaagctacaaggagagtttattaattgccgtgttgaaggcggtaatttt
gtaatggtagaaccgtatgaggtagacttcattgatgtgactcctatgcaggtagtatcg
gttgcggcttctcttatacctttcttagaaaacgatgatgcgaaccgtgctttgatgggt
tcaaacatgcaaagacaagccgttcctttaattaaaacggatgcaccttttgtaggtacc
ggagttgaaggggtagtagctaaagattccggagcgtcagtgcttgcattacatgacggt
attgttgagcaggtagattcaaatagaatcgtgattagaattctagaacaaaaagttgac
ggttctccttcggttgatatttataacttactaaaattccaaaaatccaatcataatact
tgtataaatcaaaagcctttagttaaggtcggtcattacgttaagaaaaacgatattata
gctgacggtcctagtacggataacggtgaaattgctttaggtcgaaacgtgcttgtggct
ttcttaccttggaacggttataattttgaagattccattttaatatccgaacgtatagta
aaagaggatgtatttacatctattcatattgaagagtttgaagtaatagctagagataca
cgccttggtcctgaagaaattacccgtgatataccgaatgtaagtgaagaagcgttgcgt
catcttgatgaggtcggaataatttatataggtgcagaagtacaagccggtgatatttta
gttggaaaagtaacaccaaaaagtgaatcgcctattactcctgaagagaagctactacgt
gctattttcggggaaaaagcttttgacgtaaaagattcatcgctgcatgtaccttccgga
gtgaacggaactgtagtagaagtaagggtattttctcgtagaggtgtagaaaaagaccag
cgagctattgctattgaaaaacaacaaattgaaaaattcgcaaaagacagagacgatgaa
ttagaaattattgagcattttgtgtttagttggcttgaaaagcttttagtagggcaggtg
attattaacggtcctaagcaagcaacagtaggacaaactattactactgaaatgctaaaa
ggcttatctaaagggcaattttggcagattaccgtggaagatgcaaatgtaatgaatgaa
atagagcagataaagactcattatgatgagaaaaaagaggctcttgataaaagatttgct
actaaggtagagaaattgcaaagtggtgatgatttacctcagggagctttaaaagtagta
aaagtatttattgcaactaagcataaattacaacccggggataaaatggcaggaagacac
ggaaataaaggtgttatttcacgtatcgtacctgaagaagatatgccgtttttagaagat
ggaactgtggtagatatcgttcttaaccctctaggtcttccgtcccgtatgaatatagga
cagattttagaaacgcatcttgggtgggcatcaataaatttagcaaaaaaaatatctacc
ttagtaaaggaatataaaaataaacatataggtattgagcagattaagaaattcttaatt
gaactgtatggagaaaatattaattctatacttgaaagaccggaagaagagattatcgct
ttttgtaagaaagtaagtaaaggcgtacattttgcaactcctgtatttgacggagcaaaa
gttcaggacgttaaagatatgctaaagcttgccggtcaagacccttcaggacaagtgaaa
ttaattgacggtagaaccggtgaatattttgaccgtctagtaaccgtcggacagaaatat
ttgctgaaattgcatcatttagtcgataataaaattcactcccgttctataggaccttat
agcttagtaacgcagcaaccgcttggaggtaagtctcatttcggcggacagcgtttcgga
gaaatggaatgctgggcattacaagcttacggtgcagcttatacgttacaggaaatgtta
acggttaagtcggatgacgtaaacggtaggatcaaaacttatgattctatagtacgtggt
gaaaataattttgaatcaggcattcctgaatcatttaatgttatgataaaagaatttaga
tctttatgtcttaacgtaaagcttgaagtaacttcaagttaa
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