Pararhodospirillum photometricum: RSPPHO_02461
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Entry
RSPPHO_02461 CDS
T01851
Name
(GenBank) Transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rpm
Pararhodospirillum photometricum
Pathway
rpm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RSPPHO_02461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpm03400
]
RSPPHO_02461
Enzymes [BR:
rpm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RSPPHO_02461
DNA repair and recombination proteins [BR:
rpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
RSPPHO_02461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_16
RecG_dom3_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CCG09087
UniProt:
H6SM72
LinkDB
All DBs
Position
2952072..2955611
Genome browser
AA seq
1179 aa
AA seq
DB search
MTARMGSTLVKTLLQTLPAARATLAGVPEGLDALILGRLVASGAPAVLHVARDDVRLARV
AAAVAFFYPEIEVLEFPAWDCVPYDRVSPNSDIVATRLTTLCRLADAPVPPAAGRLVLTT
ASAILQRVPPRETLAAATFVLKVGARVATEALLDYLGRHGYGRAEQVMEPGEYAVRGGLI
DLFAPGTAEPVRVDLFGDDVESLRRFDPVTQRTIGPLDALVLRPMSEVVLDKASISRFRS
GYRELFGTPASNDSLYDSVSAGRPHLGMEHWLPLFHEGMDSLFAYVPEGPVTLDPGLDAA
LQGRLDQVMEYFEARTLVAQSTENTKGLGSDGAMIYHPLPPPRLFLDLDEFNRHLQPRPG
GVFSPFVAVDVEAGGPVLDFKGRAGHDFGDVRARPGANVYDAVRAHAESLRGQGHRVVIT
AASLSARDRLAGVLREHGLAPVAPAETWAEALDKARKTQAVTVVTLPLERGFESPDLAVI
TEADILGDRLTRPVRKKRLGDRFIPDISALTEGDLVVHAEHGIGQYEGLETLTAGGAPHD
CLRVLYVDNNRLYVPVENIDVLTRYGSEVAGVALDKLGGVAWQARKAKLKQRIRDMAEQL
IKVAAVRQLKVGEVVVAPEGLYDEFAARFPYSETDDQLRAIAETLDDLASGRPMDRLVCG
DVGFGKTEVALRAAFAGVMSGRQVAVVVPTTLLARQHYLTFRDRFQGLPVRVSQLSRLVT
PRDTKLVKEELTRGTLDIVVGTHALLAKGIAFKNLGLLIIDEEQHFGVAHKERLKQLRTD
VHVLTLTATPIPRTLQLALTGVREMSLIATPPVDRLAVRTFVLPYDPVVVREAILRERYR
GGQCFYVCPRLSDIDQVMVRLQALVPDLRVAVAHGQMAASRLEEVMTAFAEGQYDVLLAT
NIIESGLDMPRVNTIIIHRADMFGLAQLYQLRGRVGRGRTRGYAYLTLPPGRTLSKAAMR
RLEVMGTLDSLGAGFTLASHDLDIRGAGNLLGDEQSGHIKEVGIELYQQMLEEAVAAARD
GAGESDESDWSPQIQLGTPILIPEAYVPDLGLRLGFYRRIATVGSEADVDELAAEMTDRF
GPVPPEVENLLRVVTIKVWCRQANVEKVDAGPKGAVLAFRDNSFPNPAGLVRFIGQHVAT
VKLRPDHRLVVRRDWEGPKHRLDGLTSLMRALAGIAREG
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
ttgacggcacgcatgggatcgaccctggtgaagactttgcttcaaaccctgcccgccgcg
cgcgccaccttggctggcgtgcccgagggcctggacgccctgatcctaggtcgtctcgtg
gccagtggcgcccccgccgtgctgcatgtcgcccgcgacgacgttcgtctggcccgggtc
gcggcggccgtggccttcttttatcccgagatcgaggtgctggagttccccgcctgggac
tgcgtgccctatgaccgggtttcgcccaacagcgatattgtcgccacccgcctgaccacc
ttgtgccgactggccgatgctccggttcctccggcggcgggccggttggtgttgaccacc
gcctcggccatcttgcaacgcgtaccgccgcgcgagaccctggccgcggcgacctttgtc
ctcaaggtcggggctcgcgttgcgaccgaggccttgctcgactatctcgggcgccacggc
tatggccgggccgagcaggtcatggaacccggcgagtatgccgtgcgcggggggctgatc
gacctgtttgccccgggcaccgccgagccggtgcgtgtggatctgtttggcgacgacgtc
gagtccctgcgccgcttcgaccccgtaacccagcgcaccatcggtccgctcgacgccttg
gtgttgcggccgatgagcgaggtggtgctcgacaaggcctcgatcagccgctttcgctcg
ggctaccgcgaactgttcggcacgccggcctcgaacgacagcctctatgattccgtgtct
gccggtcggccccacctgggcatggaacactggctgcccctgttccacgagggcatggac
agcctgtttgcctacgtgcccgagggcccggtgactcttgatcccggtctggacgcggcc
cttcagggccgtctcgatcaggtgatggagtatttcgaggcgcgcaccctggtcgcccag
tccacagaaaacaccaaaggattgggcagcgatggcgcgatgatctatcaccccttgccc
ccgccccgcctgttcctcgacctcgacgagttcaaccggcatctccagcctcgcccgggt
ggtgtgttcagcccgtttgtcgctgtcgatgtcgaagcgggcgggccggttctcgacttc
aaggggcgggccggccacgattttggcgatgtgcgggcccggcccggggccaatgtctac
gatgccgtgcgcgcccacgccgaaagcctgcgcggccagggccaccgggtggtgatcacg
gctgcctcgttgagcgcccgcgaccgtctggccggggtgctgcgcgagcacggtctggcc
cccgtcgccccggccgagacctgggccgaggcgttggacaaggcccgcaaaacccaggcc
gtcaccgtggtgaccctgccgcttgaacgcggctttgaaagccctgacctcgcggtcatt
acggaagccgatattctgggggatcgcctgacgcgacccgtgcggaaaaagcgcctgggc
gatcgctttatccccgacatttcggccctgaccgagggcgacctcgtggtccatgccgag
cacggcattggtcaatacgaaggcctggagaccctgaccgccggcggcgctccccacgac
tgtttgcgcgtgctctacgtcgataacaaccggctctatgttcccgttgaaaatattgat
gttttaacccgctatggctcagaggtcgccggcgtggccctcgacaagctggggggggtg
gcgtggcaggcgcgcaaggccaagctcaagcagcgcatccgcgacatggccgagcaactg
atcaaggttgccgccgtccgccagctcaaggtcggcgaggtggtggtcgccccggaaggg
ctctacgacgagttcgccgcccgctttccctacagcgaaaccgacgaccagttgcgcgcc
atcgccgagaccctggacgaccttgcctcgggccgtcccatggaccgcttggtctgtggt
gatgtcggctttggcaaaaccgaagtggccctgcgcgccgccttcgccggggtgatgagc
gggcggcaggtcgccgtggtcgtgcccaccaccttgctggcccgccagcattacctgacc
ttccgcgatcgctttcaaggcttgccggtgcgggtcagccagttgtcgcgcttggtcacg
ccgcgcgataccaaactggtcaaggaggaactgacccggggcaccctcgacatcgtggtg
ggcacccatgccctgctggccaaggggatcgccttcaaaaacctgggattgctcatcatc
gacgaggagcagcatttcggggtggcgcacaaggaacggctcaagcagttgcgcaccgat
gtgcatgttttgaccctgaccgccacccccatcccccgcaccttgcaacttgccctgacc
ggcgttcgtgaaatgagcctgatcgccaccccgcccgttgatcggctggcggtgcgcacc
tttgtcttgccctatgacccggtggtggtgcgcgaagccattttacgcgagcgctatcgg
ggcggtcagtgcttttacgtgtgtccgcgcctctccgacattgatcaggtgatggtccgg
ttgcaggccctggtgcccgatctgcgcgtcgccgtggcccacggtcagatggcggccagc
cggctggaggaggtgatgacggccttcgccgaggggcaatacgacgttttgctggccacc
aacatcatcgagagcggtctcgacatgccgcgggtgaataccatcatcatccaccgggcc
gacatgttcggcttggcccagctctaccagttacgaggccgtgtcgggcgcgggcgcacg
cgcggatacgcctatctcaccttgccgccgggccgcaccctatccaaggccgccatgcgc
cgcctggaggtcatgggcacgctcgacagcctgggggccggctttaccctggccagtcac
gatctcgacattcgcggcgccggcaacctgttgggcgacgaacagtcgggccacatcaag
gaagtcggcatcgagctataccagcagatgttggaagaagcggtggcggcggcccgcgac
ggggccggcgagagcgacgaaagcgactggtcgccccagatccagttgggcacccccatc
ctcatccccgaggcctatgtccccgacctgggcttgcgcctgggcttctatcgccgcatt
gccaccgtgggcagcgaggccgacgtggacgagttggctgccgagatgaccgaccgcttc
ggccccgtgcccccggaagtggaaaacctgctgcgggtggtgaccatcaaagtgtggtgc
cggcaggccaatgtcgaaaaggtcgatgccggacccaagggggccgtgctcgcctttcgt
gataacagcttccccaatcccgctggattggttcgttttattggccagcatgtggccacc
gttaaactccggcccgaccatcgtttggtggtgcgccgtgactgggaggggcccaagcac
cgcctggatgggttgaccagtttgatgcgggctctggccgggattgcccgggaggggtag
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