Roseitalea porphyridii: E0E05_02710
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Entry
E0E05_02710 CDS
T05862
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpod
Roseitalea porphyridii
Pathway
rpod03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
E0E05_02710 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpod03400
]
E0E05_02710 (ligD)
Enzymes [BR:
rpod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
E0E05_02710 (ligD)
DNA repair and recombination proteins [BR:
rpod03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
E0E05_02710 (ligD)
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Paralog
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GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QBK29602
UniProt:
A0A4P6UX19
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All DBs
Position
complement(580907..583429)
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AA seq
840 aa
AA seq
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MAQKSDRLSDYAARRDFSVTREPSGEAIPKKRGKPVFVVQKHDATRLHFDFRLEWDGVLL
SWAVTKGPSDDPSVKRLAVRTEDHPLDYQDFEGTIPKDEYGGGTVMVWDKGWWAPHGDVE
EGLDKGKLGFDLHGARMSGAWALVRMRRRKGEKRENWLLIKERDAAATEDEDHLTEAFDT
SALTGRTMDEIAEDVPAGDHGKPPDPAEHFRKKTPKFTAPELAVLVDEAPEGDDWLHEPK
FDGYRCLAALGTGGVRLYTRSGKDWTDRFHGLAEAFAFIDCDSALIDGEVVSGQAGDPAT
AGFSDLQSDLKTGRPVRFMAFDLIELDGASLKKTPLAERKEKLAALLDSAPGGGPVRYTD
HIRGRGRQVFAGFADGGAEGIISKRADSLYTGKRSGKWRKVKAERRREFVIAGTTPSSAK
GRPFASILLGTRDNGRLVYRGRVGTGYDAATLDRLESRFARLERKTAPFDDEVPREIARD
ARWLTPKLVAEIGYAELTADGRIRHGRFEGLREDKEAGTVSMDNDTQAEADNAGGDDGTL
TVRSIAISSGDRTVFPEAGCTKADVARYYGAVAERMLALAGGRPVSLVRCPRGIEGDCFF
QKHAGKGFPDEIASVPIEEKSGDTEDYLVIDRPEGFVAAAQMGAIEFHVWGARTDNLEKP
DRVVFDLDPGDGVDFDAVRHAAKDVRDFLSGLGLESVAMVTGGKGVHVIVPLRRTAGWET
VTLFARTVATIFAEAEPDRYVATMSKAKRKGKVFIDWLRNERGSTAIAPYSVRSRPGAPV
AMPVTWRALGQLKAANAFTMKSARERLSKPCPLEAADADQAITRDIITKLEEQAGQASRS
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagaagtccgacaggctgtccgactatgcggccaggcgcgatttctcggtcacg
cgcgaaccgtccggggaagcgatacccaaaaagcgcggcaagcccgtcttcgtcgtccag
aagcacgatgcgacccgcctgcatttcgatttccggctggaatgggacggcgtgctgctg
agctgggcggtgacgaaggggccgagcgacgatccgtcggtcaagcggctggccgtgcgc
accgaggaccacccgctcgactatcaggacttcgagggcaccatccccaaggacgagtat
ggcgggggcaccgtcatggtctgggacaagggctggtgggcgccgcacggcgatgtcgag
gagggcctcgacaagggcaagcttgggttcgacctgcacggcgcgcggatgagcggcgcc
tgggcgctggtgcggatgcgccgccgcaagggcgaaaagcgcgagaactggctcctgatc
aaggagcgcgacgcggcggcgaccgaagacgaggatcacctgaccgaggcgttcgacacc
agcgcgctgaccggccggacgatggacgagatcgccgaggacgtccccgccggcgatcat
ggcaagccgcccgatccggccgagcatttccgcaagaagacgccgaaattcaccgcgccg
gaactggccgtcctcgtcgacgaggcgcccgagggcgacgactggctgcatgaacccaag
ttcgacggctatcgctgcctcgccgcgctcggcacgggcggggtgcgcctttacacgcgc
tcgggcaaggactggaccgaccggtttcacgggctcgccgaggcgttcgcgttcatcgac
tgcgacagcgcgctgatcgatggcgaggtggtttcgggtcaggccggcgatccggcgacg
gcgggcttttccgatctgcagtccgatctgaagaccggccggccggtgcggttcatggcg
ttcgacctgatcgaactggacggcgcatcgctgaagaagacgccgctcgccgagcgcaag
gaaaagctcgccgcactgctcgacagcgcgcccgggggcggaccggtgcgctataccgac
catattcgcgggcgcgggcgccaggtctttgctggctttgcggacggcggcgccgagggc
atcatctcaaagcgcgccgacagcctctatacgggcaagcggtcgggcaagtggcgcaag
gtcaaggccgaacggcggcgtgagttcgtgatcgccggcacgacgccgtcgtcagcaaag
gggcggcccttcgcctcgatcctgcttggcacgcgtgacaacggcaggctcgtctatcgc
gggcgcgtgggcacggggtacgacgcggcgacgctcgaccggctcgagagccgtttcgca
aggctcgaacgcaagaccgcgccgttcgacgacgaggtgccgcgcgagatcgcccgcgac
gcgcgctggctgacgccgaagctggtcgccgagatcggctatgccgaactgaccgccgac
ggacgcatccggcacggccgcttcgagggcctgcgcgaggacaaggaggccgggaccgtg
agcatggacaacgacacgcaggccgaagcggacaatgccggcggcgacgacgggacgctg
accgtccggtcgatcgccatttcgagcggcgaccgcacggtcttccccgaggccggctgc
accaaggccgacgtcgcccgatactatggcgcggtggccgaacgcatgctggcgctcgcc
ggcggccgtcctgtctcgctggtgcgctgcccgcgcggcatcgagggggactgcttcttc
cagaagcatgcgggcaagggctttcccgacgagatcgcatcggtgccgatcgaggagaag
tccggcgacaccgaagactatctggtcatcgaccggccggaggggttcgtcgccgccgcg
cagatgggggcgatcgaattccatgtctggggcgcgcggaccgacaatctcgaaaagccc
gaccgggtcgtcttcgacctcgatccgggcgacggcgtcgacttcgacgcggtcaggcac
gcggccaaggacgtgcgcgatttcctgtccgggctcggccttgaaagcgtcgccatggtc
accggcggcaagggcgtgcacgtcatcgtgccgctgcgccgcacggccggctgggagacc
gtgacgctgttcgcccggaccgtcgcgacgatcttcgccgaggccgagcccgaccgctat
gtcgccacgatgtccaaggccaagcgcaagggcaaggtgttcatcgactggctgcgcaac
gagcggggatcgacggcgatcgcgccctattcggtgcggtcgcgaccgggcgcaccagtc
gccatgcccgtcacctggcgggcgctcggccagttgaaggcggccaacgcctttacgatg
aaaagcgcccgagagcggctttcgaagccgtgcccgctcgaggcggcggacgccgatcag
gcgatcacacgcgacatcatcacgaaactggaagagcaggccggtcaggcctcgcggtcg
tag
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