Roseitalea porphyridii: E0E05_09265
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Entry
E0E05_09265 CDS
T05862
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rpod
Roseitalea porphyridii
Pathway
rpod03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E0E05_09265 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpod03400
]
E0E05_09265 (mfd)
Enzymes [BR:
rpod01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
E0E05_09265 (mfd)
DNA repair and recombination proteins [BR:
rpod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
E0E05_09265 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
UvrB_inter
ResIII
RecG_dom3_C
SecA_DEAD
UB2H
Motif
Other DBs
NCBI-ProteinID:
QBK30764
UniProt:
A0A4P6V238
LinkDB
All DBs
Position
complement(1889603..1893109)
Genome browser
AA seq
1168 aa
AA seq
DB search
MPETLFDFPHVPADAGQLALTGVADGMEGFVLAGIAGQTDGPVLYVARDAGRMADIAQVL
GFAAPKLDVIQFPAWDCLPYDRVSPSAEVTAQRLSALIAINSLTGTPRRAVVLTTANALV
QRVAPPASIAAQAIHVRPGQVVAMEGLIDTLSGNGFARVPTVREVGEYAVRGGIVDLYAP
GGEGPVRLDFFGDTLETIRGFDAASQRTTDQKKSFTLQPMSEVALDAASVGRFRARYIDA
FGAPARDDALYASVVAQTRFAGMEHWLPFFSEEMVTLLDALPGAPVVLEPLAMNAVAERI
DQVQEYYRARTDQLSGKAMADAAPYKPVEPAALYMDQTEVDTTLAARTAIRLTPFDQPET
EGTAAIALGGRAVRNFAAERAQKDANVFEIAARHLADIRAGGKRLVLAGWSEGSLTRLTQ
ILEEHGLEGFSGAAPDAAALAGLPRSVIGTAILNIEHGFAWGDTEIVGEQDIVGDRLVRR
RRKKRGSDFISEVAALNPDDLVVHVDHGIGRFSGLKTIEAAGAPHDCLEIRYHGDDRLFL
PVENIELLSRYGSDSAEAQLDRLGGGAWQARKAKLKKRLLDMAGDLIRIAAERQMRTAPE
LRAPEGLYDEFAARFPYDETEDQLSAIEAVEEDLGQGRPMDRLICGDVGFGKTEVALRAA
FLAAMNGLQVAVVVPTTLLARQHYKSFTERFAGLPVNIAHASRIAGPKALAEAKKGIADG
SVDIVVGTHALLGQGVRFKGLGLLIVDEEQHFGVRHKERLKELKSDVHVLTLSATPIPRT
LQLALTGVRELSLITTPPVDRLAVRTFIAPFDPLVIRETLLRERYRGGQSFYVVPRISDL
GDVKAYLDENVPELKVAVAHGQMAPGELEDIMNAFYDGSYDVLLSTTIVESGLDIPTANT
LVVHRADMFGLAQLYQLRGRVGRSKLRAYALFTLPANKPLTKTADRRLKVLQSLDTLGAG
FQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAELKGEDDADHGEWSPQIT
VGTPVMIPESYVADLSLRLSLYRRLGGLEDVSEIDGFGAEMIDRFGPLPEEVEHLLKIVY
IKALCRQANVEKLDAGPKGAVVQFRNKEFANPAGLVQWIGEQGDLAKIRPDQSVVFSRNW
PSPEKRLAGAAVLMTRLAKLAETQKQAA
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaaacgcttttcgacttcccgcatgtgccagccgatgcgggccagcttgccctg
accggcgtcgccgacggcatggaggggttcgtgctggccggcattgccgggcagacggac
gggccggtgctctatgtggcgcgcgatgcgggccgtatggccgacatcgcgcaggtgctg
ggctttgccgcgcccaagctcgacgtgatccagtttccggcctgggactgcctgccctat
gaccgcgtttcgcccagcgccgaggtcaccgcgcagcggctgtcggcgctgatcgcgatc
aactcgctcaccgggacgccgcgccgggcggtcgtgctgacgacagccaatgcgctcgtc
cagcgggtcgcgccgccggcctccatcgccgcacaggcgatccatgtccgccccggccag
gtggtggcgatggaagggctcatcgacacgctgtccggcaacgggttcgcgcgcgtgccg
acggtgcgcgaggtcggcgaatatgcggtgcgcggcggtatcgtcgatctttatgcgccc
ggcggtgagggtccggtccggctcgacttcttcggcgatacgctggaaacgatccgcggc
ttcgacgcggcgagccagcgcacgaccgaccagaagaagagcttcacgctgcagccgatg
agcgaggtggcgctcgatgcggcatcggtcggccggttccgcgcgcgctacatcgacgcc
ttcggcgcgcccgcccgcgacgatgcgctctatgcctcggtcgtcgcgcagacgcgtttt
gccggcatggagcactggctgccgttcttttccgaggaaatggtgacgctgcttgacgcg
cttcccggcgcgccggtggtgctcgagccgctggcgatgaacgccgtcgccgagcgaatc
gatcaggtgcaggagtattaccgcgcgcgcaccgaccagctttccggcaaggcgatggcc
gatgcggcgccctacaagccggtcgagccggccgcgctctacatggaccagacggaggtc
gacacgacgctcgccgcgcgcaccgcgatccggcttaccccgttcgatcagcccgagacc
gagggcacggcggcgatcgcgcttggcggccgcgcggtgcgcaacttcgccgccgagcgc
gcgcagaaggacgccaacgtcttcgagatcgcggcacggcatctggccgacatccgcgcc
ggcggaaaacgcctggtgctggcgggctggtcggaaggctcgctgacgcggctgacgcag
atcctcgaggagcacggcctcgaaggcttttcgggcgccgcgcccgatgcggccgcgctc
gccggccttcccagatcggtgatcggcacggcgatcctgaacatcgagcacggttttgcc
tggggcgacacggagatcgtcggagaacaggacatcgtcggcgaccggctggtgcggcgc
aggcgcaagaagcgcggctcggacttcatctccgaggtggctgcgctcaacccggacgat
ctggtcgttcatgtcgatcacggcatcggccgcttttcgggtctgaagacgatcgaggcg
gccggcgcgccgcacgactgcctggaaatccgctaccatggcgacgaccggctgttcctg
ccggtggagaacatcgagcttctgtcgcgctacggctcggacagcgccgaggcgcaactc
gaccggctcggcggcggcgcatggcaggcgcgcaaggccaagctgaagaaacgcctgctc
gacatggcgggcgacctgatccggatcgccgccgagcggcagatgcggaccgcacccgaa
ctgcgcgcgcccgaagggctctatgacgagttcgccgcgcgctttccctatgacgagacc
gaggaccagctttcggcgatcgaggccgtcgaggaggatctggggcagggccgtccgatg
gaccggctgatctgcggcgatgtcggcttcggcaagaccgaggtggcgctgcgcgcggcg
ttcctggccgccatgaacgggctgcaggtggccgtcgtcgtgccgaccacgctgctggcg
cgccagcactacaagagcttcaccgagcgcttcgccggacttccggtcaacatcgcgcac
gcatcgcgcatcgccgggccgaaggcgctggccgaggcgaagaagggcattgccgacggt
tcggtcgacatcgtcgtcggcacacacgcgcttctggggcagggcgtccggttcaagggg
ctcggcttgctgatcgtcgacgaggagcagcatttcggcgtcaggcacaaggagcggctc
aaggagctcaaatccgacgtgcatgtgctgaccctgtcggcgacgccgatcccgcgcacg
ctgcaactggcgctgaccggcgtgcgcgaactgtcgctgatcaccacgccgccggtcgac
cggcttgcggtgcgcacgttcatcgcgccgttcgatccgctggtgatccgcgaaacgctg
ctgcgcgagcgctatcgcggcggccagagcttctacgtcgtgccgcgcatctccgacctt
ggcgacgtcaaggcctatctggacgagaacgtgcccgaactgaaggtcgccgtcgcgcac
ggacagatggcgccgggcgaactcgaagacatcatgaacgccttctatgacggctcttac
gatgtgctgctgtcgacgaccatcgtcgagagcgggctcgacattccgaccgccaacacg
ctcgtcgtccaccgcgccgacatgttcggccttgcccagctctaccagcttcgcggccgc
gtcggacggtcaaagctgcgcgcctatgcgctgttcacgctgccggccaacaagccgctg
accaagaccgccgaccggcgcctgaaggtgctgcagtcgctcgatacgctcggcgcgggc
ttccagcttgccagccacgatctggacattcgcggcgcgggcaaccttctgggcgaggaa
cagtccgggcacatcaaggaagtcgggttcgaactctaccagcagatgctcgaagaggcg
gtcgccgaactgaagggcgaggacgatgccgaccatggcgaatggtcgccgcagatcacc
gtcggcacgccggtgatgatcccggagagctatgtcgccgacctgtcgctgcgcctgtcg
ctctaccgccggcttggtgggctcgaggacgtgtccgaaatcgacggcttcggcgccgag
atgatcgaccggttcggcccgcttcccgaggaggtcgagcaccttctgaagatcgtctac
atcaaggcgctgtgccggcaggccaatgtcgaaaagctcgatgccggcccgaagggcgcg
gtcgtgcagttccgcaacaaggaattcgccaatccggcgggcctggtccagtggattggc
gagcagggcgatctggccaagatccgaccggaccagtccgtcgtcttctcgcgcaactgg
ccgagcccggagaagcgtctcgccggcgcggcggtgctgatgacccggctggccaagctg
gccgagacccagaagcaggcggcctga
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