Candidatus Rhabdochlamydia porcellionis: RHAB15C_0000863
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Entry
RHAB15C_0000863 CDS
T07448
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rpor
Candidatus Rhabdochlamydia porcellionis
Pathway
rpor03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpor00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
RHAB15C_0000863
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpor03019
]
RHAB15C_0000863
03016 Transfer RNA biogenesis [BR:
rpor03016
]
RHAB15C_0000863
Enzymes [BR:
rpor01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
RHAB15C_0000863
Messenger RNA biogenesis [BR:
rpor03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
RHAB15C_0000863
Transfer RNA biogenesis [BR:
rpor03016
]
Prokaryotic type
tRNA degradation factors
RHAB15C_0000863
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH_2
KH_5
Motif
Other DBs
NCBI-ProteinID:
QZA58980
LinkDB
All DBs
Position
969269..971389
Genome browser
AA seq
706 aa
AA seq
DB search
MQFDHQKITVSIEEGKTITFETGIVARQANGAVVLTCGETVLLSTACQGNVPSAETDFLP
LRIDYQEKFSSSGKTLGGFIKREGRPTERETLVCRLIDRPLRPMFEKGYFNEVQVLSYVL
SYDGISAPEPLAICAASAALVISDIPLIKPIGAVRVGMIDEKFIINPTVEEQKSSKLDLM
LAGTEEAILMIEGYADFLTEEQVLIAVEKGHAAIKTICQTLSKWQIQIGKPKNFGELRFL
STDLIDDMREKISSHLNTALRIKEKSDRESTVKELFTEILAQYASDKDIVYTEVEIKSAF
KKIQAELLRKMILDENIRADGRRSDQVRAIDIKPSFLPRTHGSALFTRGETQSLSVCTLG
GENMAQRSENLDGELSNRFYLQYFFPPFSVGEVGRLGAPGRREVGHGKLAERSLAKAIPS
MDVFPYVIRLESNITESNGSSSMASVCGCCLALMDAGVPIKRPIAGIAMGLILEETRFAI
LSDILGLEDALGDMDFKIAGDMEGITAFQLDIKVEGITIEVMQAALAQAKQGRLHILHKM
LETCPKSKENLSSYAPRIETVMIKPSKIGTLIGPAGKQIRAIIEETGAQIDIDDSGRVSI
ASTNSESMNRAKEMIHNLTTDVEIGKTYKGKVVSIVNFGAFVEIYGRECLCHISELAYSR
VQNVEDVVKLGDTIEVKVLDINDRGQVKLSHKATLPMPYKDAARGG
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgcaatttgaccatcagaaaataactgtctctattgaagaaggaaaaactataacattt
gagacgggcatagtggctcgccaagcaaatggtgctgttgttttaacttgcggagaaacc
gttttgttaagcactgcttgccaaggaaatgtcccttctgcagaaacagattttcttcct
ttacgcatagattatcaggaaaagttttcttcttcaggaaaaactttaggtggttttatt
aaacgtgaagggcggcctacagaaagagaaactcttgtgtgtcgattaatcgatagacct
ctaaggcctatgtttgaaaaaggatactttaatgaagtccaggttctctcttatgtatta
tcctatgatggaataagtgctcctgaacctttagctatttgtgcggcttcagcagcactt
gtcatttccgatattcctttaattaaacccattggggctgtacgcgttggaatgattgat
gagaaatttatcatcaatccaactgtagaagaacaaaagtcctctaaattggatttaatg
ttagctggaacagaagaggccatcttaatgattgaaggatatgctgattttcttacagaa
gaacaagttttaatagctgtagaaaaaggacatgctgcaattaaaacgatttgtcaaact
ctaagcaaatggcaaatacagatcggcaagcctaaaaattttggagaattaagattttta
tctacagatttgatcgacgatatgcgtgagaaaataagctctcatctaaatactgcacta
aggatcaaagaaaaatcagatagagagtctactgtcaaagagctatttacagaaatactt
gctcaatatgcttctgataaagatattgtatatacagaagtagagattaaaagtgcattt
aaaaaaattcaagctgaacttctgcgtaaaatgattttagatgaaaacatacgtgctgat
ggcagaagatcagaccaagttcgcgctattgatattaaaccttcttttttacctcgtaca
catggcagtgctttatttacaagaggagaaactcaatctttatctgtttgcacgcttggt
ggagaaaacatggcacagcgctctgagaatttagatggagagctttctaatcgtttttat
ttacaatatttctttcctcctttttcagttggcgaagtagggcgcttaggagctcctgga
agacgagaagttggtcatggtaaattagcagaacgctcgttagcaaaggctattccttcc
atggatgtattcccctatgttattcgtttagaatcaaacattacagaatccaatggatct
tcttccatggcatctgtttgtggatgctgtcttgccttaatggatgcaggtgtaccgatt
aaaagacctattgcaggaattgccatgggattaatcttagaagaaacaaggttcgctatt
ctctctgatattcttggattagaagatgctttaggcgatatggacttcaaaattgcagga
gatatggaaggaataactgctttccaactcgacattaaagtagaagggattaccatcgag
gttatgcaagcagctctagctcaagctaagcaaggaagacttcacattttacacaaaatg
cttgaaacatgtcctaagtccaaagaaaacctttcctcctatgctccacgtatcgaaact
gttatgattaaaccttcaaaaataggaacattaattggaccagcaggtaagcaaattcgc
gccattattgaagaaaccggtgcacaaatcgatattgatgatagtggccgtgtcagcatt
gcatccactaatagtgaatcgatgaacagggccaaagagatgatccataatctaacaact
gatgtagagattggaaaaacttataaagggaaagtggtatccatcgttaattttggtgct
tttgtagaaatctatggcagagaatgtctatgtcatatctctgagctcgcttacagtaga
gttcaaaatgtagaagatgtagtaaaactaggcgataccattgaagttaaagtcttagat
attaatgatcgtggtcaagttaaactcagccataaagcaacccttccaatgccctacaaa
gatgcagctcgcggaggctag
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