Rhodococcus pseudokoreensis: JWS13_00085
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Entry
JWS13_00085 CDS
T08508
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
Organism
rpsk
Rhodococcus pseudokoreensis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
Motif
Other DBs
NCBI-ProteinID:
QSE87151
LinkDB
All DBs
Position
unnamed5:17287..21162
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AA seq
1291 aa
AA seq
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MNTAAHRLKGLGYLLTLLTLLIGIPTALYLFQGNPLAPLAELTSFNALKELLLTQDDGTL
FITALTLLGWSAWATFAYTTIIEIVAAARGARPREIKGLQLQQRSAAALVGGALMLITAG
TATASPIADMAMTNGPAHTAPAHAAPVDPSIPARTNVPTWTKEPATTPTGDTITTKPGDT
LWSLAEHHLGDGTRYPEIRDLNRHIISDDNWLHAGWALTLPAEPTPPVTGAYTVQPGDTL
WDLAEQHLRDGTRWTEIRGVDGPLTNDLLVIGQQLVIQPDIQLAPPPASISPQSQGGPEP
APAPAPAPEVADVPASAPAPAPEVAAPESAPEIATPPTASEVGPDTTTAPNAAPETDAVP
TPAPEATPTPAPAPETTPLVPTAVLGTEAPTASVPETAPAPAPDSTLTHEQMLTLSAAPP
AEASPPVPAEPTQPSLVVPNIPEQAEMVPGGDEMAQAEARAAAEAAARVFGMTLDPSGQA
VTPSPARAPVPPAVPPAPAPAAATPAPGPAEALAPPHTPATTAEVPAPTTNKLTPPPTQA
QESETTNTQSNTAEMQPENTPAPIPEIAPEPGNAPPAPPVTDLPPTHIPLDTSPVPTPDN
TASTTDLNNEDAGISSSTLVGVSALAAVALLAALRTYRRRQQHRRQRGERIPLPTGPAAV
VEETVRSSADPEILNTLDAALRHLADHCRTNKQPLPAVLGVFIHPNTIELALLDTIELPA
PWARAGDTNAWSINADATIDAPPTAISPYPSLVELGDLPDNSRILLNLEQIGHLGINADP
DTAQSILRALAVFLAFSPLADNLKVTLVGFCEDLPALVDTGHLSHTDSADNVLTRLARAA
ATDAETLKIEGIPSISSARTTYDDSEMTTPEIILLAEPLTPKQRDTFTEILAAAPRIAVA
AITASDSTADWTLTATGTAPARLARGAGAAFDLTPATLTKNDYAALLELLDTARTEPKPT
IASLGDMWTAEVLDLNISEAATIDDVLAAPAAAPHRVNPPATTDTGDTDVDDTTPDTTPD
LPYIWIRLLGTPQITPLNGTDAPGGREPSLTEIGALLVTHPGILNHDLDAKIWPNDPLNR
APTPEQPKKKAVRRQNQFTRLRTWLGETTNGDLAFPKSGDRTGRSGYRLHPDVTTDWDTW
NQLLQGHPANATDTNLHTATTLITGQPFTHTDPTKYAWAEHLQHEMLAALTDALEEHATR
MLHRGDTRTAHQLATRGLNLNDAHEGLWRIAIIATHARDDINTTQALIDELLTTLTELEE
EPEEETAALLKLLADFHDTTGDRPYSISAAS
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccgcagcacaccgcctcaaaggcctcggatacctcctcaccctcctcacactc
ctgatcggaatccccaccgccctctacctcttccagggcaaccccctcgcgcccctcgcc
gaactcacctcgttcaacgcactcaaagaactcctcctcacccaagacgacggcaccctt
ttcatcaccgccctcaccctcctcggatggagcgcctgggcaaccttcgcctacaccact
atcatcgaaatcgtcgctgccgcacgcggagcccgaccccgagaaatcaaaggactccaa
ctccagcaacgatccgccgccgccctcgtcggcggtgcactcatgctcatcacagccggc
accgccaccgcatcacccatcgccgacatggcaatgaccaacggacccgcccacacagca
cccgcccacgcagcacccgttgaccccagcatcccagccagaaccaacgtcccgacctgg
accaaagaacccgccaccacacccactggcgacaccatcaccaccaaacccggcgacacc
ctctggagcctcgccgaacatcacctcggagacggcacccgctaccccgaaatccgcgac
ctcaaccgccacatcatcagcgacgacaactggctccacgccggatgggccctcaccctc
cccgccgaaccaacaccgcccgtcaccggcgcctacaccgtccaacccggcgacaccctc
tgggacctcgccgaacaacatctccgcgacggcacccgctggaccgagatccgcggcgtc
gacggccccctcaccaacgacctcctcgtcatcggtcaacaactcgtcatccaacctgac
atccagctggcaccgcctccggcttcgatctcaccccagtcgcagggcggccccgaacct
gctccggcacctgcgccggcaccggaagttgctgatgtgcctgcgtccgcgccggcacct
gcgccggaagttgctgcacctgaaagtgcgccggagattgcgacacccccaacggcgtcc
gaagtgggccccgacaccacgaccgcacccaacgctgcccctgaaacagacgcagtcccc
accccggcacccgaggcgacaccaactcccgcgccagcacctgaaaccacacctctcgtc
cccaccgccgtgctcggcaccgaagcgcccaccgcgtcggtgcccgaaaccgcacctgcg
ccggcaccggattcgacgttaacgcacgagcaaatgctgaccctctcagcggccccgcca
gcggaagcctcaccccctgtacccgcggaaccgactcaacccagcctcgtggtgcccaac
atccccgagcaggccgagatggtccccggcggcgatgaaatggcccaagcggaggcccga
gccgccgccgaagccgccgcgagggtcttcggcatgacactcgacccgagtgggcaggcc
gtcaccccttcgcccgctcgggcaccagtaccgccagccgtaccccctgcgccggcacct
gcagccgcaacccccgccccgggacccgccgaagcgctcgcgccgccgcacacccccgca
acgaccgcggaagtacccgcccctacaacgaacaagctgacacccccgccaacacaggcg
caagaatcagagacgacaaacacgcagtccaacacggcggaaatgcaaccagaaaatacg
ccagcaccaataccggaaatagcaccagaaccgggaaatgcaccgccggcaccccccgtc
acagaccttccacccacccacatcccccttgacaccagccccgtccccacacccgataac
accgcctccaccaccgacctcaacaacgaagacgccggcatctcctcctctaccctcgtc
ggagtctccgccctggccgccgtcgccctcctcgccgcgctccgcacctaccgccgccgc
caacaacaccgccgccaacgtggagaacggatcccactacccaccgggcctgcggccgtc
gtggaagaaaccgtccgctcctctgccgaccccgaaatcctcaacaccctcgacgcagcg
ctacggcacctcgccgaccactgccgcaccaacaaacaacctttacccgcagtcctcggg
gtcttcatccaccccaacaccatcgaactggcactcctcgacaccatcgaactccccgca
ccatgggcgcgtgccggcgacacgaacgcctggtccatcaacgccgacgcaacaatcgac
gccccacccactgcgatcagcccatacccctcactcgtcgaactcggcgacctccccgac
aactcaagaatcctgctcaacctcgaacaaatcggccacctcggaatcaacgcggatccc
gacaccgcccagagcatcctccgcgccctcgccgtcttcctggcgttctcacccctcgcc
gacaacctcaaggtcaccctggtcggcttctgcgaagatctaccggcgctcgtcgacacc
ggccatctcagccacaccgactccgccgacaacgtccttacccgcctcgcccgcgccgcc
gccactgacgccgaaaccctcaaaattgaaggcattccctctatctcctctgcccgcacc
acctatgacgacagcgagatgacgaccccggaaatcatcctcctcgccgaacccctcaca
cccaagcagcgcgacaccttcaccgaaatactcgccgccgctccacgaatcgccgtcgcc
gcgatcacggcatctgacagcacagccgactggacactcaccgccaccggcacggcaccc
gcacgccttgcccgtggcgccggcgcagcgtttgacctcacaccggccactctcaccaag
aacgactacgcagcgctcctcgaactcctcgacacggcccgcaccgaacccaagccaacc
atcgcgtccctcggcgacatgtggaccgccgaagtactcgacctcaacatcagcgaagcc
gccaccatcgacgacgtcctcgcggcgcctgccgcagccccgcaccgtgtcaacccaccc
gccaccaccgacaccggtgacaccgatgtcgacgacaccacccccgacaccacaccagac
ctcccatacatctggatccgcctcctcggcacaccccaaatcacccccctcaacggaaca
gacgcacccggcggccgcgaaccatccctcaccgaaattggagccctcctcgtcacccac
cccggtatcctcaaccacgacctcgacgccaaaatctggcccaacgaccccctcaaccgg
gcacccacccccgaacaaccaaaaaagaaagcagtccgccgccaaaaccaattcacccgc
ctccgcacctggctcggcgaaaccacaaacggcgacctcgcattccccaaatccggagac
cgcacaggccgctccggctaccgcctacaccccgacgtcacaaccgactgggacacctgg
aaccaactcctccaaggacacccagccaatgccaccgacaccaacctccacaccgcaaca
accctcatcaccggacaacccttcacccacaccgaccccaccaaatacgcctgggccgaa
catctccaacacgaaatgctcgccgcactcaccgacgcactcgaagaacatgccacccgc
atgctccaccgcggcgacacccgcacagcccaccaactcgccacccgcggcctcaacctc
aacgacgcccacgaaggactctggcgcatcgcgattatcgccacccacgctcgcgacgac
atcaacaccacacaagccctcatcgacgaactcctgaccacactcaccgaactcgaagaa
gaacccgaagaagaaacagcagcactactcaaactcctcgcagacttccacgacaccacc
ggcgaccgcccctacagcatcagtgcggcaagctga
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