Agrobacterium pusense CFBP5875: CFBP5875_12855
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Entry
CFBP5875_12855 CDS
T06598
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rpus
Agrobacterium pusense CFBP5875
Brite
KEGG Orthology (KO) [BR:
rpus00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpus03019
]
CFBP5875_12855 (hrpB)
Enzymes [BR:
rpus01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CFBP5875_12855 (hrpB)
Messenger RNA biogenesis [BR:
rpus03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CFBP5875_12855 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
AAA_30
ResIII
AAA_19
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QCL85362
LinkDB
All DBs
Position
circular:complement(2579639..2582125)
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AA seq
828 aa
AA seq
DB search
MTRTPAPIKTDLPELPASAVLAEIAGALSGARRAVLSAPPGAGKTTLVPLYLLQQRWRGD
GKIILLEPRRLAARAAAGRMADLMHEDVGDTVGYRMRLDNRISSKTRIEVVTEGVFARMV
LDDPELSDVSTVIFDEFHERSLDGDFGLALALDVQTGLREDLRILVMSATLDVERISALM
GGAPVIQSLGRTFPIDIRYEERWQGMPVDEKVARAIREAHASETGSILAFLPGQSEITRT
AARLEGHFPDDTDIIPLYGNLSQKEQDAAIKPAASGRRKIVLATSIAETSITIDGVRVVV
DSGLQRLPVFEPATGITRLETVRASRASADQRAGRAGRTEPGVAIRLWHQGQTAALSAFT
PPQILASDLAGLALDLAHWGVHDPSSLAFLDAPPEAALKESVALLKNLGALDESGALTPQ
GRLMRGLSLPPRLAAMVIAAAGEGSGKKAAMLAVMLTEQGLGGNDIDLDDRLRRFLADRG
ERAQAARKLAFRLLDTVGDMPAANDLPSEAGPLLLHAYPDRIALQRGARGRYVMANGRGA
ELAETERLAASRMLVVADITGRAAQPRILAAAGIDRADIEERMPHLIVQQDQLLFDKASG
QARARRVVRLGAIILDETPLPRPDGEQAAQALANGVRDFGIGILPFSKETAQLRDRIGFL
NASIGEPWPDVSDEALLSRLDEWFIPFQHGVRSLQDIRPGSLSEGILSLVPHEVARDLGR
LAPTHFEAPTGQRHPIRYDASEPTLSIRVQELFGLKAHPAIAQGRLPLLLELTSPAHRPI
QTTRDLPGFWAGSWKDVRADMRGRYPRHPWPEDPADALPTSRAKPRGT
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
atgaccagaacaccagcgccaataaagaccgacttacctgaacttcccgccagcgctgtt
ctcgcggaaatcgcaggtgccttgtcgggggcgagacgtgcggttctctcggcccctccc
ggggcgggcaaaacgacgctggtgccgctttatctcctacagcagaggtggcggggcgac
ggaaagatcattcttctcgagccacgccggcttgcggcccgcgcagcggcgggacgcatg
gccgatctcatgcatgaagatgtcggtgacaccgtcggataccgcatgcggctcgacaat
cgtatttcatcaaaaacccggatcgaggtggtaacggaaggcgtatttgcgcggatggtt
ctggatgatcccgagctttccgatgtctcgacggtgatattcgacgaatttcatgagcgc
tcgcttgacggtgatttcgggctggcgctggccctcgatgtccagaccggtttgcgtgag
gacctgcggatcctcgtcatgtccgcaactctcgacgttgaacgcatcagcgcgcttatg
ggtggcgctccggtcattcaaagtcttggaaggacctttccgatcgacattcgttacgag
gaacgctggcagggcatgccggtcgatgaaaaggtggcaagggcgattagggaagcccat
gcatcggaaacagggtccattctggccttcctgcccggacagtcggaaattacccggacg
gctgcaaggctggaaggacatttccccgacgatacggatatcatcccgctttacggcaat
ctttctcagaaggagcaggacgccgcgatcaagccggcagcctccgggcgacggaagatt
gtccttgcaacatcgatagcggagacctcgataaccatcgatggtgtgagagtcgtggtc
gatagcggtctgcagcggttgccggttttcgaaccggcgaccggcatcaccaggcttgag
accgtgcgggcatcacgcgcctcggccgatcagcgcgccggtcgcgccggccgaaccgag
cccggcgttgccattcgcctctggcatcaggggcagacggcagcactcagtgcatttacg
ccgccgcaaattttggcgagcgatcttgccggccttgcgctcgatcttgcccattggggt
gttcatgacccctcgtctctcgcctttctggacgcgccacctgaggctgccctcaaagaa
tcggtcgcactcctgaaaaatcttggcgcccttgatgaaagcggcgcactgacgccgcag
ggccgcctgatgcgaggcctctccctgccgccgaggctcgcagcgatggtgattgcagcc
gcaggcgaaggctcgggaaaaaaggcggcgatgcttgcggtcatgctgacggaacagggc
ctgggcggaaatgatatcgatctcgatgacagactgcggcgctttcttgccgatagaggt
gaaagggcgcaggcggcgcgcaagctggctttccgccttctcgacacagtcggtgatatg
ccggcggcaaacgacctgccgagcgaggcaggaccgcttctgctgcacgcatatccggac
aggatcgcgcttcagcgcggcgcgcgcggccggtatgtcatggcgaatggccgcggggct
gaactggctgaaacggagcggctggcggcgagccgaatgcttgttgtcgctgacattacc
ggacgggccgcgcagccgcgcatccttgcggcggccggcatcgacagggccgatatagaa
gagcgtatgccacatcttatcgttcagcaggatcagctgctgttcgacaaggcgagcgga
caggcgcgggcgcgtcgggtagtgcgtctgggcgccatcattctggacgaaacgcccctg
ccccgtcccgacggtgagcaggcagcgcaagcgctcgccaacggcgttcgggatttcggc
atcggcatacttcctttttcgaaagagaccgcgcaattgcgcgatcggatcggatttctg
aatgccagcatcggagagccctggccggatgtcagcgacgaggcgctgctttcgcggctg
gacgaatggttcatcccttttcagcatggcgtccggagccttcaggacatccggcccggc
agtctttccgaagggattctgtccctggtgccacatgaggtcgcccgagatctcggcagg
ctggcgccgacccatttcgaagcgccgacgggccagcggcaccccatccgctatgacgcc
agcgagccgacgctttccattcgcgtgcaggagcttttcgggctgaaggcgcacccggcc
attgcgcaggggcggttgccgctgctcctggaattgacgtcgccggcgcacaggccgata
cagacgacgcgtgatcttcccggcttctgggcgggatcgtggaaggacgtgcgggcagat
atgcgtggtcgctatccgcgtcatccgtggccggaggatcccgccgatgccctgccgacc
agccgtgcgaaaccgcgcggaacgtga
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