KEGG   Agrobacterium pusense CFBP5875: CFBP5875_23865
Entry
CFBP5875_23865    CDS       T06598                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
rpus  Agrobacterium pusense CFBP5875
Pathway
rpus03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:rpus00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    CFBP5875_23865 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rpus03400]
    CFBP5875_23865 (ligD)
Enzymes [BR:rpus01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     CFBP5875_23865 (ligD)
DNA repair and recombination proteins [BR:rpus03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     CFBP5875_23865 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QCL87652
LinkDB
Position
pAtCFBP5875:113624..116275
AA seq 883 aa
MANDKLSTYRQKRDFQKTQEPSGKTKLKASNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPQDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNRTPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDFSVEENGAAILDEN
NTSIASGRTMAAIAAGKGKKPKPFMVQSGDVQADAVWDSNHGLAADKRAADTKKKRPASR
KAAKSAMPDFILPQLCETLERPPSAAGWIHEIKFDGYRIQARIENGEVTLKTRKGLDWTA
KYPAIATSAASLPDAIIDGEICALDENGAPDFAALQAALSEGKTDALVYFAFDLLFEGSD
DLRQLPLTERKKRLEALLSEAGEDPRLRFVEHFETGGDAVLKSACKLSLEGIVSKQADAP
YQSGRTDTWAKSKCRAGHEVVIGAYAKTDAKFRSLLVGVFRGGHFVYVGRVGTGYGAKTV
DTILPKLRALETSKSPFTGIGAPKAEPNIVWVKPELVAEIQFAGWTADGLVRQAAFKGLR
EDKPAKEVEAETPASPGKTETPTPARPKPSRPARGKNTKAEVMGVMISSPDKPLWPDAND
GEPVTKEDLARYHEAVGPWLIDHIKGRPCSIIRTPDGIGGEQFFQRHAMPGTSNLLELVK
VFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPNEPEVPGRLVFDLDPGPDVSFSTVV
EAAREMRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGKKLSWPEAKGFAHDVCMQMARD
NPDLYLIKMAKNQRNGRIFLDYLRNDRMATAVAPLSPRARPGAPVSMPLTWKQVKTDLDP
KRFTIRTVPALLSKTTAWQDYCDGQRSLEQAIKRLTKSMKQAA
NT seq 2652 nt   +upstreamnt  +downstreamnt
atggccaacgacaagctttcgacctacaggcagaaacgcgattttcagaagacgcaggag
ccaagcggaaaaacgaagctgaaagcttcaaaccgcaggcgctttgtcatccagaaacac
gacgccacgcggctccattatgacctgcgcctcgagctcgacggcgtcttcaagtcttgg
gctgtgaccaagggaccgtctctcgatccccaggacaagcgcctggccgtggaggtggaa
gaccacccgctggactatggtgacttcgaaggcacgatccccaaaggccaatatggcggc
ggcaccgtcatgctctgggatcgcggctactgggagccggaaggcaaccggacacccgag
caggcgctcgccaagggcgacttcaaatttacactggagggagagcggctgcatggcagc
ttcgtgctggtgcggatgcgcaatgaccgtgacggtggcaaacggacgaactggctgctg
atcaagcatcgcgacgacttctcggttgaagaaaacggcgccgccatccttgacgaaaac
aacacgtcgattgcctcgggcagaaccatggccgccatcgccgccggtaaaggaaagaaa
ccaaaaccgttcatggtgcagagcggcgatgtgcaggccgacgccgtctgggacagcaat
catggactggcggcagacaaacgtgcggcggatacgaagaaaaagcgcccggcatcgcgg
aaagcagcgaagtccgcgatgcccgacttcatacttccgcagctttgcgaaacgctcgaa
cgcccgccctcggccgctggctggatccacgagatcaaattcgacggataccgcattcag
gcgcgcattgaaaacggcgaagtcacgctgaagacgcgcaaggggctggactggacggct
aagtatccggcgattgcgacatcggccgcaagcctgcccgatgccatcatcgacggggag
atctgtgcgctcgatgaaaacggtgcgccggatttcgccgcacttcaggcggcgctgtca
gaaggtaaaacggatgcgctcgtctattttgctttcgacctgctgttcgaggggagtgat
gatctaaggcaactgccgcttacggaacgcaagaaaaggctcgaagcgcttctgagcgag
gcgggggaagatccgcgcctgcggttcgtcgaacactttgagaccggcggcgatgcagta
ttaaagtcggcctgcaagctctcgctggagggcattgtctcgaagcaggcggatgccccc
tatcagtccgggcgtaccgatacctgggcgaaatccaaatgccgcgccggacatgaggtc
gtcattggcgcctacgccaaaaccgacgccaagtttcgttcacttcttgtcggcgtcttc
aggggcggccacttcgtctatgtcggtcgggtcgggaccggctatggtgccaaaacagtg
gatacgatcttgccgaagctccgggcactggaaacctcaaagtcgccttttaccggaata
ggcgctccgaaagcggaacccaacatcgtctgggtcaagcctgaactggtggccgagatc
cagttcgctggctggaccgcggacggactggtccgtcaggcagccttcaagggtttgcgg
gaagacaagccggcgaaggaggtcgaggccgaaacgccggcatcgcccgggaaaaccgaa
acgccaacgccggcccggccaaagccgtcgcgaccggcacgcggcaagaacaccaaggca
gaagttatgggcgtgatgatctccagccctgacaagccgctctggcctgatgcaaatgac
ggtgagcccgtcaccaaggaggatctcgcgcgctatcatgaggccgttggtccatggctg
atcgaccatattaagggacggccatgctctatcatccggacgcctgacggcatcggtgga
gagcagttcttccagagacacgcgatgccgggaacgtcgaacctgctcgagctggtcaag
gtgttcggcgacaagaaaccctatctgcagattgatcgcgttgagggccttgccgccatc
gcccagatcggcggcgtcgaactgcatccctggaattgcgagcccaacgaaccggaggtg
cccggtcgtcttgtcttcgaccttgacccgggtccggacgtatctttctccaccgtggtc
gaagccgcccgggaaatgcgcgatcggctggaggaacttggtctcgtcagtttctgcaag
accactggtggcaagggccttcacgtcgtaacaccgcttgcggtaccgaagggaaagaag
ttgagctggccggaggcgaaaggcttcgcacacgatgtctgcatgcagatggcacgtgac
aaccctgacctttacctgatcaagatggcgaagaaccagcgcaacggccggatcttcctc
gactacctgcgcaatgaccgaatggcgactgctgttgcgccgctgtcaccgcgcgcccgg
ccaggcgcaccagtatcgatgccgctgacctggaagcaggtaaaaacggatctcgatccg
aaacgctttaccattcgcaccgtaccggcgcttttgtcgaagacaaccgcctggcaggat
tactgcgacgggcagcgttcgctggagcaggccatcaagcggctgacgaagtcgatgaaa
caggccgcctga

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