Agrobacterium pusense CFBP5875: CFBP5875_23865
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Entry
CFBP5875_23865 CDS
T06598
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpus
Agrobacterium pusense CFBP5875
Pathway
rpus03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CFBP5875_23865 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpus03400
]
CFBP5875_23865 (ligD)
Enzymes [BR:
rpus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CFBP5875_23865 (ligD)
DNA repair and recombination proteins [BR:
rpus03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CFBP5875_23865 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QCL87652
LinkDB
All DBs
Position
pAtCFBP5875:113624..116275
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AA seq
883 aa
AA seq
DB search
MANDKLSTYRQKRDFQKTQEPSGKTKLKASNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPQDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNRTPE
QALAKGDFKFTLEGERLHGSFVLVRMRNDRDGGKRTNWLLIKHRDDFSVEENGAAILDEN
NTSIASGRTMAAIAAGKGKKPKPFMVQSGDVQADAVWDSNHGLAADKRAADTKKKRPASR
KAAKSAMPDFILPQLCETLERPPSAAGWIHEIKFDGYRIQARIENGEVTLKTRKGLDWTA
KYPAIATSAASLPDAIIDGEICALDENGAPDFAALQAALSEGKTDALVYFAFDLLFEGSD
DLRQLPLTERKKRLEALLSEAGEDPRLRFVEHFETGGDAVLKSACKLSLEGIVSKQADAP
YQSGRTDTWAKSKCRAGHEVVIGAYAKTDAKFRSLLVGVFRGGHFVYVGRVGTGYGAKTV
DTILPKLRALETSKSPFTGIGAPKAEPNIVWVKPELVAEIQFAGWTADGLVRQAAFKGLR
EDKPAKEVEAETPASPGKTETPTPARPKPSRPARGKNTKAEVMGVMISSPDKPLWPDAND
GEPVTKEDLARYHEAVGPWLIDHIKGRPCSIIRTPDGIGGEQFFQRHAMPGTSNLLELVK
VFGDKKPYLQIDRVEGLAAIAQIGGVELHPWNCEPNEPEVPGRLVFDLDPGPDVSFSTVV
EAAREMRDRLEELGLVSFCKTTGGKGLHVVTPLAVPKGKKLSWPEAKGFAHDVCMQMARD
NPDLYLIKMAKNQRNGRIFLDYLRNDRMATAVAPLSPRARPGAPVSMPLTWKQVKTDLDP
KRFTIRTVPALLSKTTAWQDYCDGQRSLEQAIKRLTKSMKQAA
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atggccaacgacaagctttcgacctacaggcagaaacgcgattttcagaagacgcaggag
ccaagcggaaaaacgaagctgaaagcttcaaaccgcaggcgctttgtcatccagaaacac
gacgccacgcggctccattatgacctgcgcctcgagctcgacggcgtcttcaagtcttgg
gctgtgaccaagggaccgtctctcgatccccaggacaagcgcctggccgtggaggtggaa
gaccacccgctggactatggtgacttcgaaggcacgatccccaaaggccaatatggcggc
ggcaccgtcatgctctgggatcgcggctactgggagccggaaggcaaccggacacccgag
caggcgctcgccaagggcgacttcaaatttacactggagggagagcggctgcatggcagc
ttcgtgctggtgcggatgcgcaatgaccgtgacggtggcaaacggacgaactggctgctg
atcaagcatcgcgacgacttctcggttgaagaaaacggcgccgccatccttgacgaaaac
aacacgtcgattgcctcgggcagaaccatggccgccatcgccgccggtaaaggaaagaaa
ccaaaaccgttcatggtgcagagcggcgatgtgcaggccgacgccgtctgggacagcaat
catggactggcggcagacaaacgtgcggcggatacgaagaaaaagcgcccggcatcgcgg
aaagcagcgaagtccgcgatgcccgacttcatacttccgcagctttgcgaaacgctcgaa
cgcccgccctcggccgctggctggatccacgagatcaaattcgacggataccgcattcag
gcgcgcattgaaaacggcgaagtcacgctgaagacgcgcaaggggctggactggacggct
aagtatccggcgattgcgacatcggccgcaagcctgcccgatgccatcatcgacggggag
atctgtgcgctcgatgaaaacggtgcgccggatttcgccgcacttcaggcggcgctgtca
gaaggtaaaacggatgcgctcgtctattttgctttcgacctgctgttcgaggggagtgat
gatctaaggcaactgccgcttacggaacgcaagaaaaggctcgaagcgcttctgagcgag
gcgggggaagatccgcgcctgcggttcgtcgaacactttgagaccggcggcgatgcagta
ttaaagtcggcctgcaagctctcgctggagggcattgtctcgaagcaggcggatgccccc
tatcagtccgggcgtaccgatacctgggcgaaatccaaatgccgcgccggacatgaggtc
gtcattggcgcctacgccaaaaccgacgccaagtttcgttcacttcttgtcggcgtcttc
aggggcggccacttcgtctatgtcggtcgggtcgggaccggctatggtgccaaaacagtg
gatacgatcttgccgaagctccgggcactggaaacctcaaagtcgccttttaccggaata
ggcgctccgaaagcggaacccaacatcgtctgggtcaagcctgaactggtggccgagatc
cagttcgctggctggaccgcggacggactggtccgtcaggcagccttcaagggtttgcgg
gaagacaagccggcgaaggaggtcgaggccgaaacgccggcatcgcccgggaaaaccgaa
acgccaacgccggcccggccaaagccgtcgcgaccggcacgcggcaagaacaccaaggca
gaagttatgggcgtgatgatctccagccctgacaagccgctctggcctgatgcaaatgac
ggtgagcccgtcaccaaggaggatctcgcgcgctatcatgaggccgttggtccatggctg
atcgaccatattaagggacggccatgctctatcatccggacgcctgacggcatcggtgga
gagcagttcttccagagacacgcgatgccgggaacgtcgaacctgctcgagctggtcaag
gtgttcggcgacaagaaaccctatctgcagattgatcgcgttgagggccttgccgccatc
gcccagatcggcggcgtcgaactgcatccctggaattgcgagcccaacgaaccggaggtg
cccggtcgtcttgtcttcgaccttgacccgggtccggacgtatctttctccaccgtggtc
gaagccgcccgggaaatgcgcgatcggctggaggaacttggtctcgtcagtttctgcaag
accactggtggcaagggccttcacgtcgtaacaccgcttgcggtaccgaagggaaagaag
ttgagctggccggaggcgaaaggcttcgcacacgatgtctgcatgcagatggcacgtgac
aaccctgacctttacctgatcaagatggcgaagaaccagcgcaacggccggatcttcctc
gactacctgcgcaatgaccgaatggcgactgctgttgcgccgctgtcaccgcgcgcccgg
ccaggcgcaccagtatcgatgccgctgacctggaagcaggtaaaaacggatctcgatccg
aaacgctttaccattcgcaccgtaccggcgcttttgtcgaagacaaccgcctggcaggat
tactgcgacgggcagcgttcgctggagcaggccatcaagcggctgacgaagtcgatgaaa
caggccgcctga
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