Rickettsia prowazekii RpGvF24: MA7_00675
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Entry
MA7_00675 CDS
T01793
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
rpv
Rickettsia prowazekii RpGvF24
Pathway
rpv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rpv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MA7_00675 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rpv03021
]
MA7_00675 (rpoB)
03400 DNA repair and recombination proteins [BR:
rpv03400
]
MA7_00675 (rpoB)
Enzymes [BR:
rpv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MA7_00675 (rpoB)
Transcription machinery [BR:
rpv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MA7_00675 (rpoB)
DNA repair and recombination proteins [BR:
rpv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MA7_00675 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DUF5121
Motif
Other DBs
NCBI-ProteinID:
AFE53159
LinkDB
All DBs
Position
160871..164995
Genome browser
AA seq
1374 aa
AA seq
DB search
MVSLRDNIESQPLSHNRRIRKNFGHINLVADIPNLIEIQKNSYEKNFLQLNIKDSERKNK
GLQSILNSIFPISDSSNIANLEFVKYEFDTPKYDVDECSQRSLSYAAPLKVTLRLSIWDI
DEDTGTREIKGIKEQEVYMGDIPLMTKNGTFIINGTERVVVSQMHRSPGVFFYHDEGKVH
SSGKLLYSARVIPYRGSWLDFEFDAKDIIYFRIDRKRKLYATTLLRAIGMSTEEIIKFYY
NSVTYKFVKNKGWSVKFIPQHITAHRLTSDLVDADTGNVLLKAGQKITLRLAQKYFGVGL
NNILVTHETLIGKYLSEDLRDPASDEVLAKIGEMITSDMLKVINDLKIKNVNVLVINPQS
GPYIRNTLFADKNQDREAALCDIFRVLRPGEPANIEAAESLFYNLFFDAERYDLSEVGRI
KMNSRLELNISEEVTVLTIDDIKNIVRILVELKDGKGIIDDIDHLGNRRVRSVGELIENQ
FRIGLVRMEKSVIERMSAGDVDTVMPHDLVNSKILVSVVKEFFSTSQLSQFMDQTNPLSE
ITHKRRLSALGPGGLSRDRAGFEVRDVHPTHYGRICPIETPEGQNIGLINSMATYARINK
HGFIESPYRRVKNGYVTDEVVYLSAIEEGKYKIGQANSKVDQDGKLQGEFINCRVEGGNF
VMVEPDEVDFIDVTPMQVVSVAASLIPFLENDDANRALMGSNMQRQAVPLIKTEAPFVGT
GVEGVVAKDSGASVLALHDGIVERVDSNRIVIRTLEQKVDGSPSVDIYNLLKFQKSNHNT
CINQKPLVKVGHYVKKNDIIADGPSTDNGEIALGRNVLVAFLPWNGYNFEDSILISERIV
KEDVFTSIHIEEFEVIARDTRLGPEEITRDIPNVSEEALRHLDEVGIIYVGAEVKAGDIL
VGKVTPKSESPITPEEKLLRAIFGEKAFDVKDSSLHVPSGVSGTVVEVRIFSRRGVEKDQ
RAIAIEKQQIEKLAKDRDDELEIIEHFVFSWLEKLLVGHVIINGPKQITAGQTITTEMLK
GLSKGQLWQITVEDANVMNEIEQIKIHYDEKKYALDKRFTTKVEKLQSDDDLPQGALKVV
KVFIATKHKLQPGDKMAGRHGNKGVISRIVPEEDMPFLEDGTVVDIVLNPLGLPSRMNIG
QILETHLGWASINLAKKISTLVKEYKDNHIDIEEIKKFLLELYGKDINYILEGSEEEIIS
FCNKVSKGVYFATPVFDGAKVQDVKDMLELAGQDLSGQVKLIDGRTGEYFDRLVTVGHKY
LLKLHHLVDNKIHSRSIGPYSLVTQQPLGGKSHFGGQRFGEMECWALQAYGAAYTLQEML
TVKSDDVNGRIKTYDSIVRGENNFESGIPESFNVMIKEFRSLCLNVKLEVTPSK
NT seq
4125 nt
NT seq
+upstream
nt +downstream
nt
atggtttcattaagggataatatagaatcacaacccttgtcacataatagaagaataaga
aagaattttggtcacataaatttagtagcagatataccgaatttgattgaaattcaaaaa
aattcatatgagaaaaattttctacagttaaatattaaagattctgaaagaaaaaacaaa
ggtttacaatctatattaaactcaatttttcctatttcagattcctcaaatattgcaaat
ttagaatttgtcaaatatgaatttgatactccaaaatatgatgtagacgagtgtagtcaa
agaagtttaagttatgcagctcctcttaaagttactttaagattaagtatttgggatata
gacgaagatacaggtactagagaaattaaaggaattaaagagcaagaagtatatatgggc
gatattccattaatgactaaaaatggtacttttattatcaacggtacggaaagagtagtt
gtatcacaaatgcatcgctcaccaggtgtattcttttatcatgatgaaggaaaagtgcac
tcttccggcaagcttttatattctgctcgtgttattccatatagaggatcttggcttgat
ttcgaattcgatgctaaagatattatttattttaggattgatagaaaaaggaagctttat
gctactactttactaagagctattggtatgagtactgaagaaattataaaattttattat
aattcagtaacttataagtttgtaaaaaataaagggtggtctgttaaatttatacctcag
catattactgctcatcgtttaacaagtgatttagtggatgcagatacaggaaatgtttta
ctgaaagcaggacaaaaaattacactgcgtttggctcaaaaatattttggtgtaggtctt
aataatattttagtaactcatgaaactttaatcggtaaatatctatctgaagatttaaga
gatcctgcaagtgatgaagttttagctaaaattggtgaaatgattacttctgatatgtta
aaagttattaatgatcttaaaattaaaaatgttaacgtattagtaatcaatcctcaatca
ggtccatatataagaaacaccttgttcgctgataaaaatcaggaccgtgaggcagcatta
tgtgacatttttcgagttttaagaccaggcgaacctgctaatattgaagcagcagaaagc
ctattttataatttattctttgatgcagaaagatatgatctttcagaagttgggcgaata
aaaatgaattctaggttagaattgaatatttctgaagaagttacagttctaacaattgat
gatattaaaaatattgtaaggattttagtcgagcttaaagatggtaaaggtattatagat
gatattgaccatttaggtaatagaagggttagatcggttggtgaattgatagaaaatcaa
tttagaataggtttagtacggatggaaaaatctgtaattgaaaggatgtcagcaggtgat
gttgataccgtaatgcctcatgatttagtaaattctaaaattttagtttcggtagtaaaa
gaattttttagtacctcgcaattatcccaatttatggatcaaacaaatccattatctgag
ataactcataaaagaagactttcagcccttgggcctggaggtcttagtcgagatcgagca
ggttttgaggtacgtgacgtacatcctactcattacggtcgtatttgtcctattgaaaca
ccggaaggtcagaatattggtttaataaactctatggctacttatgctagaataaataaa
catggttttatagagagtccgtatagaagagttaaaaatggatatgtaactgatgaggta
gtatatctttctgccattgaggaaggtaaatacaaaatagggcaagcaaattctaaagtt
gatcaagatggaaaactgcaaggagagttcattaattgccgtgttgagggtggaaatttt
gtaatggtagaaccggatgaggtggatttcattgatgtaacgcctatgcaggtagtatcg
gttgcagcttctcttataccttttttagaaaatgatgatgcgaaccgtgctttgatgggg
tcaaatatgcaaaggcaagctgttcctttaattaaaactgaagcaccttttgtaggtact
ggagttgaaggggtagtggctaaagattctggtgcttcggtgcttgcattacatgatggt
attgttgaacgggtagactcaaatagaattgtgattagaactttagaacaaaaagttgat
gggtctccttctgttgatatttataatttattaaaattccaaaaatcgaatcataatact
tgtataaatcaaaagcctttagttaaggtcggtcattatgttaagaaaaatgatattata
gctgatggtcctagtacagataatggtgaaattgctttaggtagaaatgtacttgtggct
ttcttaccttggaacggttataattttgaagattcaattttaatatctgaacgtatagta
aaagaggatgtgtttacatcaattcatattgaagagtttgaagtaatagctagagataca
cgccttggtcctgaagaaattacacgcgatataccgaatgtaagtgaagaagcgttgcgt
catcttgatgaagtcgggataatttatgtaggtgcagaagtaaaagctggtgatatttta
gttggaaaagtaacgccaaaaagtgaatctcctattacccctgaagagaaactactacgt
gctatttttggagaaaaagcttttgatgtaaaagattcatcgctgcatgtaccttctgga
gttagtggcactgtagtagaagtaaggatattttctcgtagaggtgtagaaaaagatcag
agagctattgctattgaaaaacaacaaattgaaaaattagcaaaagacagagatgatgag
ttagaaattattgagcattttgtctttagttggcttgaaaagcttttagtaggacatgtt
attattaatggtcctaagcaaataacagcaggacaaactattactactgaaatgctaaaa
ggtttatctaaaggacagctttggcagattacagtagaagatgcaaatgtaatgaatgaa
atagagcagatcaaaattcattatgatgagaaaaaatatgcgctcgataaaagatttact
actaaggtagagaaattgcaaagcgatgatgatttacctcaaggggctttaaaagtagta
aaagtatttattgccactaagcataaattacagcctggggataagatggcaggaagacac
ggaaataaaggtgttatttcacgtatcgtacctgaagaagatatgccatttttagaagat
ggaactgtcgtagatatagtgcttaatcctctaggtctcccatcccgtatgaatatagga
cagattttagaaacccatcttggatgggcatcaataaatttagcaaaaaaaatatctacc
ttagtaaaggaatataaagataatcatatagatattgaggaaattaagaaattcttactt
gagctgtacggcaaggatattaattatatccttgaaggatcagaagaagaaattatctct
ttctgtaataaagtaagtaaaggtgtatattttgcaactcctgtatttgatggtgcaaaa
gttcaagatgttaaagatatgttggaacttgctggccaagatctttcaggacaagtaaaa
ttaattgatggtagaactggtgaatatttcgatcgtttagtaactgtaggacacaaatat
ttgctaaaattacatcacttagtcgataataaaattcactctcgttctataggaccttat
agcttagtaacacagcaaccgcttggaggtaagtctcattttggtgggcaacgttttggc
gaaatggaatgttgggcattacaagcttatggtgcagcttatacgttacaggaaatgtta
actgttaagtcagatgatgtaaacggtaggatcaaaacttatgattctatagtacgtggt
gaaaataattttgaatcaggcattcctgaatcctttaatgttatgataaaagaatttaga
tctttatgtctcaacgtaaagcttgaagtaactccaagtaaataa
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