Rhodopseudomonas palustris DX-1: Rpdx1_1680
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Entry
Rpdx1_1680 CDS
T01381
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Pathway
rpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rpdx1_1680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpx03019
]
Rpdx1_1680
Enzymes [BR:
rpx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Rpdx1_1680
Messenger RNA biogenesis [BR:
rpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Rpdx1_1680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
ADU43297
UniProt:
E6VK35
LinkDB
All DBs
Position
complement(1787677..1789098)
Genome browser
AA seq
473 aa
AA seq
DB search
MERTHLLTSFQDFGLADPISRALKEENYLTPTPIQAQTIPLALAGRDVVGIAQTGTGKTA
SFALPILHRLLQNRIKPTSKTCRVLVLSPTRELSGQILDSFNAYGRHIHLTATLAIGGVP
MGRQVRSLMGGVDVLVATPGRLLDLVQGNALKLTQVEFLVLDEADRMLDMGFINDIRKIV
AKLPIKRQTLFFSATMPKDIADLAEQMLRDPARVAVTPVSSTVERINQRVIQLDHSAKPA
VLAQLLKDEKVNQALVFTRTKHGADKVVKGLARAGITADAIHGNKSQNYRERVLAAFRTG
ELRTLVATDIAARGIDVDGVSHVFNFDLPNIPETYVHRIGRTARAGADGTAISLCAGEEM
AYLRDIEKLIKVSLPKEDRRTPGAHAAPTPPPHRGPRQSPHGHPPRNGDAPTRGKNRRRR
GPAAGPARQPEASRHETAARPQHSGNGEGLQGVAFLQRKNRPAQPAAHQRPHR
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaacccaccttttgacctcctttcaggattttggtctcgccgatccgatctct
cgcgctctcaaagaagaaaactacctgaccccgacgccgatccaggcgcagacgattccg
ctcgcgctcgccggccgtgacgtcgtcggcatcgcccagaccggcaccggcaaaaccgcg
tcgttcgcgctgccgatcctgcaccggctgctgcagaatcgaatcaagccgacctccaag
acctgccgggtgctggtgctgagcccgacccgggaactctccggccagatcctcgacagc
ttcaatgcctatggccgccacatccatctcaccgccacgctggcgatcggcggcgtgccg
atgggccggcaggtgcgcagcctgatgggcggcgtcgacgtgctggtcgcgaccccgggc
cggctgctcgacctggtccagggcaatgcgctgaagctgacccaggtcgagttcctggtg
ctggacgaagccgaccgcatgctcgacatgggcttcatcaacgacatccggaagatcgtc
gccaaactgccgatcaagcggcagacgctgttcttctcggccaccatgccgaaggatatc
gccgacctggccgagcagatgctgcgggatcccgcccgggttgcggtgacgccggtgtcc
tcgacggtggagcggatcaaccagcgggtgatccagctcgaccattcggccaagccggcg
gtgctcgcccaactgctcaaggacgagaaggtcaatcaggcgctggtgttcacccggacc
aagcacggcgccgacaaggtggtgaaggggctggcccgcgccggcattaccgccgacgct
atccacggtaacaagtcgcagaattaccgcgagcgggtgctggcggcgttccgcaccggc
gaactgcggaccctggtggcgaccgatatcgccgcccgcggtatcgacgtcgacggcgtg
tcgcatgtgttcaatttcgacctgccgaacattccggagacctacgtccaccgcatcggc
cgcaccgcgcgcgccggagcggacggcactgcgatctcgctttgcgccggcgaggagatg
gcgtatctgcgcgacatcgaaaagctgatcaaggtgtcgctgcccaaggaagatcgccgt
accccgggcgcccacgccgcccccaccccgccgccgcatcgcggcccccgtcaatcgccc
cacggccatccgccgcgcaatggtgatgcaccgacgcggggaaagaatcgtcggcgccgc
ggtcctgcagctggccctgcccgccagccggaagccagccgccacgagacggcggcgcgc
ccgcagcacagtgggaatggcgagggactgcagggcgtggcgttcttgcagcgcaagaac
cgcccggcccagccggccgcgcaccaacgaccgcatcgctaa
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