Rhodopseudomonas palustris DX-1: Rpdx1_1701
Help
Entry
Rpdx1_1701 CDS
T01381
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Pathway
rpx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Rpdx1_1701
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpx03400
]
Rpdx1_1701
Enzymes [BR:
rpx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Rpdx1_1701
DNA repair and recombination proteins [BR:
rpx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Rpdx1_1701
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
ADU43318
UniProt:
E6VKS9
LinkDB
All DBs
Position
1808752..1811496
Genome browser
AA seq
914 aa
AA seq
DB search
MASNKLSIYRKKRDFEQTAEPRGDAKVAPSKQRRFVIQKHDATRLHYDLRLEYGGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVQLWDRGYWECDDPEHGF
KKGDLKFTLHGEKLHGSWVLVRMRHDRNGGKRTNWLLIKHRDDNAREGDANTVLDDDRSV
ASGRAMETIAAGKGKAPKPFMLRQAAAKVTADAVWDSSSGLAADQRAKTGAANKTTKAKP
KTPSKAKATKSAKPAARSKAAAHGKRAAMPNFVPPQLCISVERPPSGDGWGHEIKFDGYR
MQLRVEQGRAKLLTRKGLDWTAKFSAIAEDAASLPDAILDTEVVALDSHGQPDFAALQAA
LSDGDTDNLICFAFDLLYAEGEDLRRLPLSERKERLSALLKAARGRRKEGLIRYVEHFET
GGDAILQSACKLSLEGIVSKKLDAPYRSGRSGAWTKAKCRAGHEVVIGGWKTTNGKFRSL
LVGVHRGDDLAYVGIVGTGFGQGVVKRILPELKAHEADSNPFSGANAPNKTRDVHWVTPE
LVAEIEFAGFTGGGMVRQAAFKGLRADKPAAEVEAEEPQQVELAEPKPKRRAAKTAKPRK
SAGKRAAPRRADAARSEVMGVVISKPDKELWPASDISGAVTKRDLADYFAEVGDWLIPHI
KGRPCSIVRAPDGIGGELFFQRHAMPGMSNLIELAKVSGDRKPYVQIDRLEGLIAVAQIG
GVELHPWNCAQDRYDVPGRLVFDLDPAPEVGFDEVIVAAKEMKQRLEALGLATFCKTTGG
KGLHVVLPLKPDDSVDWKAAKTFAQTVCAQMAEDSPEQYLLNMSKQKRTGKIFLDYLRND
RMSTAVAVLSPRARTGATVSMPVTWSQVKAGLDPKRYTIETVPALMKRSKAWTDYNEAAA
PLKPAIKALTSGRK
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
gtggccagcaataagctcagcatctaccgcaagaaacgcgatttcgagcagaccgcggag
ccgcggggcgacgccaaggtcgcaccatcgaaacagcgacggttcgtgatccagaagcac
gatgccacccgtctgcactacgacctgcgtctggaatatggcggcgtgttcaagtcatgg
gcggtgaccaagggaccgtcgctcgatccgcacgacaagcgcctcgcggtcgaggttgag
gatcatccgctggactacggcgacttcgaaggcacgattccgaagggccagtatggcggc
ggcaccgtgcagctctgggaccgcggctattgggagtgcgacgatcccgagcacggcttc
aaaaagggcgacctgaagttcaccctgcacggcgagaagctgcatggcagttgggtgctg
gtgcggatgcggcacgaccgcaatggcggcaagcgcaccaattggctgctgatcaagcac
cgcgacgataacgcccgcgagggcgacgccaacaccgtgctcgacgacgaccgctcggtc
gcctcgggccgcgccatggagacgatcgcggcgggcaagggcaaggcaccgaagccgttc
atgctgcgccaggcggccgcgaaggtgacggcggacgcggtgtgggattccagcagcggg
cttgcggccgatcagcgggccaagaccggcgctgcgaacaagacgaccaaggccaagccg
aagacgccctccaaagcgaaagccaccaagtctgcgaaacctgcggcgcggagtaaggcg
gccgcgcatggcaagcgcgcggccatgccgaatttcgtgccgccgcagctctgcatctcg
gtggaacggccgcccagcggcgacggctggggccacgagatcaagttcgacggctaccgg
atgcagctccgcgtcgagcaggggcgagccaaactgctgactcgcaagggtctcgactgg
accgcaaagttcagcgcgatcgcggaagacgcggcgtcgctgccggacgcaattctcgac
accgaggtggtggcgctggattcgcacggccagccggatttcgccgcgctgcaggcggcg
ctgtcggacggcgacaccgacaacctgatctgctttgcgttcgatctgctgtacgcggag
ggcgaggatctgcgccggctgccgctgtcggagcgcaaggagcggctctccgctttgctg
aaggccgcacgtggccgtcgcaaggaagggctgatccgctacgtcgagcatttcgaaacc
ggcggtgacgccattctgcaatcggcctgcaagctgtcgctcgaaggcatcgtctcgaag
aagctcgatgcgccgtatcgctccggccgcagcggtgcctggaccaaggcgaagtgccgc
gccggccacgaggtggtgatcggcggttggaagaccaccaacggcaaatttcgttcgctg
ctggtcggcgttcaccgcggcgatgacctcgcctatgtgggcatcgtcggcaccgggttt
ggccagggcgtcgtcaagcgcatcctgcccgagctgaaggcgcatgaagccgatagcaat
ccgttcagtggcgccaatgcgccgaataagacgcgcgacgtccactgggtgactccggag
ctggtcgccgagatcgaatttgccggcttcaccggcggcggcatggtgcgtcaggcggcc
ttcaaggggctgcgcgccgacaagccggccgcggaggtcgaagccgaggagccgcagcag
gtcgagcttgccgaaccaaagccgaagcgccgggccgccaagacggcgaagccgcgaaag
tccgcgggcaagcgcgccgcgccccgccgcgccgacgctgcccggtccgaggtgatgggc
gtggtgatctccaagcccgacaaggagctgtggcctgcgagcgacatcagcggcgccgtg
accaagcgcgatctggccgattacttcgccgaagtgggcgactggctgatcccgcacatc
aagggacggccgtgttcgatcgtgcgcgcgcccgacggcatcggcggcgagctgttcttt
cagcggcacgccatgccgggaatgtcgaacctgatcgaactggccaaagtctccggcgac
cgcaaaccgtatgtgcagatcgaccgcctcgagggcctgatcgcggtggcgcagatcggc
ggcgtcgagttgcatccgtggaactgcgcgcaggaccgctacgacgtgccgggacggctg
gtgttcgatctcgatccggcgcccgaggtcgggttcgacgaggtgatcgtggccgccaag
gaaatgaagcagcgcctcgaagcgctggggctcgccacgttctgcaagaccaccggcggc
aagggcttgcacgtcgtgttgccgctgaagcccgacgacagtgtcgactggaaggcggcc
aagacgtttgcgcagacggtgtgtgcgcagatggccgaggacagtcccgagcagtatctg
ctcaacatgtcgaagcagaagcgcacgggaaagattttcctcgattacttgcgcaacgac
cggatgtcgaccgcggtcgcggtgctgtcgccgcgagcccgcaccggcgcaaccgtgtcg
atgccggtgacgtggtcgcaggtgaaggccggtctcgaccccaagcgctacaccatcgag
acggtgcccgcgttgatgaagcggtccaaggcgtggaccgactacaacgaggcggcagcc
ccgctgaagccggcgatcaaggcgctgacgtcgggccggaagtag
DBGET
integrated database retrieval system
