Rhodopseudomonas palustris DX-1: Rpdx1_2301
Help
Entry
Rpdx1_2301 CDS
T01381
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rpx
Rhodopseudomonas palustris DX-1
Pathway
rpx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rpx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Rpdx1_2301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rpx03019
]
Rpdx1_2301
03016 Transfer RNA biogenesis [BR:
rpx03016
]
Rpdx1_2301
Enzymes [BR:
rpx01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Rpdx1_2301
Messenger RNA biogenesis [BR:
rpx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Rpdx1_2301
Transfer RNA biogenesis [BR:
rpx03016
]
Prokaryotic type
tRNA degradation factors
Rpdx1_2301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
ADU43893
UniProt:
E6VCT8
LinkDB
All DBs
Position
complement(2469779..2472124)
Genome browser
AA seq
781 aa
AA seq
DB search
MSKPRDAKFPDKATLLAFIRAHPGKIGTREIAREYGLKNADRAELKRMLRELADGGSIRK
SGRRKVSEPATLPPTLLADIVSRDADGELIATPSEWDEQDGDAPKIRIHTPRRIKPGTAA
GVGDRALLHVETADPREGGPAYVGRVIRVLERGKARILGIFRALPQGGGRMVPVDKKQAG
RELNIAAHDAGGAQDGDLVSVDLIRTRGYGLASGRVKERLGSLASEKAISLIAIHTHDIP
QEFSTSAIRESEAAEPATLKGREDWRDLPLVTIDPPDAKDHDDAVHAEPDPDPNNKGGVI
LHVAIADVAYYVRPGSALDRDALRRGNSVYFPDRVVPMLPERISNDLCSLKPGEPRGALA
VRMVIDAQGRKRSHSFHRILMRSAAKLSYAQAQAAIDGKPDDVTGPLLETILKPLYDAYA
VVKRGRDERDPLDLDLPERKIILKPDGTVDRVIVPERLDAHRLIEEFMILANVAAAEMLE
KKALPLIYRVHDEPSVEKVHNLVDFLKTLDLSFAKGGALRPAQFNRILAMVKGEDSEPLV
NEVVLRSQAQAEYAAENYGHFGLNLRRYAHFTSPIRRYADLVVHRALIRALDLGDGALPS
SETTETLAEVAAQISLTERRAMKAERETVDRLIAHHLADRIGATFQGRVSGVTKAGLFVK
LSDTGADGLIPIRSLGDEYYNYDETRHALIGSRSGAMHRLGDVVDVKLVEAAPVAGALRF
ELVSNANVEFTHRKTARKTKGTSKTKLKTESGKPARAKPGRAKARKAAKPKQKTKSGRGK
R
NT seq
2346 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaaaccgcgcgacgcgaagtttccggacaaggccaccctcctcgccttcatccgc
gcccaccccggcaagatcggcacccgggagatcgcgcgcgaatacggcctgaagaacgcc
gatcgcgccgaactgaagcgaatgctgcgcgagctcgccgacggcggcagcatccgcaag
agcggccgccgcaaggtctcggagccggcgacgctgcccccgaccttgctggccgacatc
gtctcgcgcgacgccgacggcgaactgatcgccacgccgtccgaatgggacgagcaggac
ggcgacgcgccgaagatccgcatccacaccccacgccggatcaagccgggcaccgcggcc
ggcgtcggtgaccgggcgctgctgcatgtcgagaccgcggacccgcgcgagggtggcccc
gcttatgtcggccgcgtcatccgtgtgctggagcgcggcaaggcgcggatcctcggcatc
ttccgcgcgctgccgcagggcggcggccggatggtgccggtcgacaagaaacaggccggc
cgcgaactcaacatcgcggcgcacgatgccggcggcgcgcaggatggcgatctcgtcagt
gtcgatctgatccgcacccgcggctatggcctcgcctccggccgcgtcaaggaacggctc
ggctcgctcgccagcgaaaaagcgatcagcctgatcgcgatccacacccacgatatcccg
caggaattctccacctccgcgatccgcgagtccgaagccgcggagccggcaacgctgaag
ggccgcgaagactggcgcgacctgccgctggtgacgatcgatccgccggacgccaaggat
cacgacgacgcggtccatgccgagccggaccccgaccccaacaacaaaggcggcgtgatc
ctgcatgtcgcgatcgccgacgtcgcctactacgtgcgccccggctctgcgctcgatcgc
gacgcgctgcgccgcggcaattcggtgtactttcccgatcgcgtcgtgccgatgctgccg
gagcggatctccaacgacctgtgttcgctgaaaccgggtgagccccgcggcgccctcgcc
gttcggatggtgatcgacgcgcaggggcgcaagcgctcgcattcgttccaccgcatcctg
atgcgctcggccgcgaagctgagctacgcgcaggcgcaggcggcgatcgacggcaagccc
gacgacgtcaccggcccgctactcgaaaccatcctgaagccgctgtacgacgcttatgcc
gtggtcaagcgcggccgcgacgagcgcgatccgctcgacctcgatctgcccgaacgcaag
atcatcctgaagccggacggcaccgtcgaccgcgtgatcgtcccggaacggctcgatgca
caccggctgatcgaggagttcatgatcctcgccaacgtcgcagccgccgagatgctggag
aagaaggcgctgccgctgatctaccgggtgcacgacgaacccagcgtcgagaaggtccac
aacctcgtcgacttcttgaagacgctcgatctgtcgttcgccaaaggcggcgcgctgcgg
ccggcgcagttcaaccgcatcctggcgatggtcaaaggcgaggactccgagccgctggtc
aacgaggtggtgctgcgctcgcaggcgcaggccgaatatgcggccgaaaactacggccat
ttcggcctgaacttgcgccgctacgcgcatttcacctcgccgatccggcgctacgccgac
ctcgtcgtgcaccgtgcgctgatccgcgcgctcgatctcggcgacggcgcgctgccgtcg
agcgagaccaccgagacgctggcggaagtcgccgcgcagatctcgctgaccgaacgccgc
gcgatgaaagccgagcgcgagaccgtcgaccggctgatcgcgcatcacctcgccgaccgg
atcggcgccacgttccagggccgcgtctccggcgtcaccaaggccgggctgttcgtcaag
ctgagcgacaccggcgccgacgggctgatcccgatccgctcgctcggcgacgagtactac
aactacgacgaaacgcgccacgcgctcatcggctcgcgcagcggggccatgcaccggctg
ggggatgtggtcgacgtcaagctggtggaagctgcgccggtggccggcgcgctgcggttc
gagctggtgagcaatgccaacgtcgaattcacgcaccgcaagactgcacgcaagaccaag
gggacaagcaagaccaagctgaaaaccgagagcggcaagccggcccgcgccaagcccgga
cgggcgaaagcgcggaaagcggcgaagccgaaacaaaaaaccaagtccgggagaggaaaa
cgctga
DBGET
integrated database retrieval system
