Rhodococcus pyridinivorans SB3094: Y013_20910
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Entry
Y013_20910 CDS
T02974
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Y013_20910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_20910
Enzymes [BR:
rpy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Y013_20910
DNA repair and recombination proteins [BR:
rpy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Y013_20910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Big_4
Motif
Other DBs
NCBI-ProteinID:
AHD22913
UniProt:
V9XKL3
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All DBs
Position
4445209..4447617
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AA seq
802 aa
AA seq
DB search
MPTRTIDGHRITLTNLDKVLYPSTGTTKGEVVEYYEAVAEAMLPHIVGRAATRNRWPNGV
GEQSFFEKNLPDHAPAWLDRRTLHHKDRRVTYPLFDSAAGLVWLGQQAALELHVHQWRFD
GEKAGPATRIVFDLDPGPGVGLAECAEVARHVRDTVAELGWSAYPVTSGSKGIHLYVPLD
RMLSSSGASKVAKQVARNLETTLPDLVTATMAKSAREGKVFVDWSQNNSSKTTVAPYSLR
GRDEPWVAAPRSWDELDDPDLAQLQFREVLARIEEFGDLLAGLDPPLGKAVSGDKAVSGD
KVVSGDKAGSGGKTVSGGDALDTYRGKRDASRTPEPVPDRVPDDGPGNRFVIQEHHARRL
HYDLRLERDGVLASWAVPKNLPDTSGRNNLAVRTEDHPIEYLTFHGTIPKGEYGAGSMTV
WDTGTYETEKWRDDEVIVRFHGDRIEGRYALIRTEKNQWLAHRMKDQSSPSTESSDADPA
SLVGSSGSKSFPRDLAPMLATSGDVSGLDAEDWAFEGKWDGYRAIAEIEDGTVRLRSRSG
RDVTGDYRKLVELATILDGHRAVLDGEIVAVDRSGVTSFSMLQRGVNYEYRVFDVLYLDG
VSLLRKTYDDRRRVLEALAAATDGLIVPDLLSGDGSKALARSRAKNWEGVVAKRRDSVYL
PGKRGAGWIKSKNWLTQTVVLGGYRRGNGNRASTFGSLLLGVYDDDGEFVYVGKVGTGFD
DETLLSVAKAVKGHTSRTNPFANEVPAAERRDAVWLRPELVGEVRFGGWTEGDRVRHASW
RGLRDDVDASSVVREEETGADC
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atgccgacccggacgatcgatggtcaccgcatcaccctgaccaacctcgacaaggtgctg
tatccgagcaccgggacgacgaagggcgaggtcgtcgagtactacgaagccgtcgccgag
gcgatgcttccccacatcgtcggccgagcagcgacccgtaatcggtggccgaacggtgtc
ggcgaacagtccttcttcgagaagaacctccccgaccacgcaccggcctggctcgaccgt
cgcaccctgcatcacaaggaccggcgggtcacctacccgctgttcgattccgccgccggg
ctcgtctggctcgggcaacaggcagccctcgaactccacgtgcaccagtggcgtttcgac
ggagagaaggccggacccgcgacccgcatcgtcttcgacctcgacccggggcccggcgtg
ggcctggccgagtgtgcggaggtcgcgcgccacgtgcgcgacaccgtcgccgaactcggg
tggtcggcctatccggtcaccagcggcagcaagggcatccacctgtacgtcccgctcgat
cggatgctgtcgtcgtcgggggcgtcgaaggtcgcgaagcaggtcgcgcgcaatctcgag
accacccttcccgacctggtgaccgcgacgatggcgaaatcggcgcgcgagggcaaggtc
ttcgtcgactggagccagaacaacagttccaagacgacggtcgcgccgtactcgctgcgc
ggtcgcgacgagccgtgggtggcggcgccgcgcagctgggacgaactcgacgaccccgac
ctcgcgcaactgcagttccgggaggtcctcgcccgcatcgaggagttcggggacctgctc
gccggtctcgacccgcccctcggcaaggctgtgtccggagacaaggccgtgtccggagac
aaggtcgtgtccggagacaaggccgggtccggcggcaagaccgtgtccggcggagacgcc
ctggacacctaccgcggcaagcgcgacgcgtcgcgcaccccggaaccggtacccgaccgc
gtccccgacgacggccccggcaacaggttcgtcatccaggagcaccacgcgcgtcgcctg
cactacgacctgaggctcgaacgcgacggtgtgctggcgtcgtgggccgtaccgaagaac
ctgccggacacctcggggcgcaacaatctcgcggtacggaccgaggaccacccgatcgag
tacctgaccttccacgggacgatcccgaagggcgaatacggcgccggcagcatgaccgtg
tgggacaccggcacctacgagaccgagaagtggcgggacgacgaggtgatcgtgcggttc
cacggcgaccggatcgagggacggtacgcgctgatccgcaccgagaagaaccagtggctg
gcgcaccgcatgaaggaccagtcgtcgccgagcaccgagtcgtccgatgccgatccggcc
tccctcgtcggatcgtcggggtccaagtccttcccgcgcgatctcgcgcccatgctcgcg
acctccggtgacgtctcgggtctcgacgccgaagactgggcgttcgaaggcaaatgggac
ggataccgcgccatcgcggagatcgaggacggcaccgtcaggctccgcagccgatccggt
cgcgatgtcaccggcgactaccggaagctcgtcgaactcgcgacgatcctcgacggtcac
cgggcggtgctcgacggggagatcgtcgccgtcgaccgctccggggtgacgagcttctcg
atgctgcagcggggcgtgaactacgagtaccgcgtgttcgacgtgctgtatctcgacggg
gtgtcgctgctgcgcaagacctacgacgatcgccgacgggtcctcgaggcgctcgccgct
gccacggacggactgatcgtcccggatctgctctcgggtgacggctcgaaggctctcgcg
cgcagccgcgcgaagaactgggagggcgtggtcgccaaacgccgggactccgtgtatctg
ccgggcaagcgcggcgccggatggatcaaatcgaagaactggctcacccagaccgtcgtg
ctcggcggataccgccgtggcaacggcaaccgtgcctcgaccttcggctccctgctgctc
ggcgtctacgacgacgacggtgagttcgtgtacgtcggcaaggtcggcaccggtttcgac
gacgagacgctcctgtcggtggcgaaggctgtgaaagggcacacgagccgcacgaacccg
ttcgcgaacgaagtgccggccgccgaacgccgcgatgcggtgtggttgcggcccgaactc
gtgggggaggtgcggttcggaggatggacggaaggagaccgggtgcggcacgcgagctgg
cgtggtctgcgcgacgatgtggacgcgtcgagtgtggtgcgagaagaggaaacaggcgct
gactgctaa
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