Rhodococcus pyridinivorans SB3094: Y013_21625
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Entry
Y013_21625 CDS
T02974
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Y013_21625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_21625
Enzymes [BR:
rpy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Y013_21625
DNA repair and recombination proteins [BR:
rpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Y013_21625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
CarD_TRCF_RID
Helicase_C
ResIII
LSDAT_prok
AAA_22
UB2H
RecG_dom3_C
IstB_IS21
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AHD23043
UniProt:
V9XKY9
LinkDB
All DBs
Position
4585012..4588665
Genome browser
AA seq
1217 aa
AA seq
DB search
MSAVPPAAVPLSGLARIALADDRLRRIGELAGSAEQEIVAPPAARPFVAAALAEKTPLLV
VTATGREADDLTAELTEMFGEGVTQFPSWETLPHERLSPSADTVGRRLHVLRRLARPDDR
DLGPALRVVVATVRSLVQPMAPGLGEIDPVTLRVGTEHDFEELVERLVELAYTRVDMVGK
RGEFAVRGGILDVFPPTADHPVRVEFWGDEVTELRCFSVADQRSISEVDVPVLVAPPCRE
LLLTDEVKARAAQLAEDNPADAALVEMLDKMAGGIPVEGMEALLPVLQPGELQLLTDVLP
AGAHVLICDPEKVRTRASDLARTGQEFLEASWTAASIGGAAPLDTSNLNGVDGRKLDLGA
SAYRSLRQVREAAQAAGRPWWTLSPLASGADTELVLDVQPAPEVRGSEDLLSMLFVNLRA
HVTAGGRAVIVVAGAGTGQRILERLKENEVPAAKLEPGTEPVRGQVGVMRGCLHEGVVLP
GNDDNVVPGLVVVTEADLTGNRVVTEGRKTPVKRRNQVDPLALNAGDFVVHDQHGIGKFV
EMVERTVGGARREYLVIEYAPGKRGQPGDKLFVPMEQLDQLSRYVGGELPSVSKLGGSDW
ANTKRKARKAVREIAGELVRLYAARQASPGHAFAPDSPWQKEMEDAFPFTETQDQLTVIS
EVKADMEKAVPMDRVVIGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFT
ERMAAFPVTVKGLSRFTDVSDSRAITEGMADGTVDIVVGTHRLLQTGIRWKDLGLVIVDE
EQRFGVEHKEHIKALRTHVDVLTMSATPIPRTLEMSMAGIREMSTILTPPEERHPILTYV
GAYNDKQVAAAIRRELLRDGQVFYVHNRVSSIDKAAKRLRDLVPEARVAVAHGQMNEETL
EKTVQGFWQREFDVLVCTTIVETGLDISNANTLIVERADSLGLSQLHQVRGRVGRSRERG
YAYFLYPAEKPLTETAYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGV
GFDLYVRLVGEAVEAYRAAADGRTVTTDEAPKEVRIDLPVDAHIPADYVASDRLRLEAYR
KLAAANDDAAIATVVDELVDRYGPLPDEVQRLVSVGRLRLLCREYGLEEVAVTGTQIRIS
PMELPDSKQMRLKRLYPGAQYRATSGLVQLPIPRTGGVGSDRVRDVALLQYIADFLLALD
GKPQGSVDLNSAATVNA
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
ttgtctgctgtgcccccggccgctgtcccactgtccggattggcgcggatcgcgctggcc
gacgacagactgcgcaggatcggcgagctcgccggttccgccgaacaggagatcgtcgcc
ccacccgccgcgcggccgttcgtcgcggcggcgctggccgagaagacacctctgctcgtg
gtcaccgccaccggacgcgaggccgacgatctcaccgccgaactcaccgagatgttcggc
gagggcgtcacgcagttcccctcgtgggagaccttgccgcacgagcgcctgtcgccgagc
gccgacacggtcggccgtcgcctgcacgtcctgcgtcgcctcgcgcgtcccgacgatcgc
gatctcgggcccgcactgcgggtcgtcgtcgccaccgtacggtcgctggtgcagccgatg
gctcccggactcggcgagatcgaccccgtcacgctgcgggtcggcaccgaacacgacttc
gaggaactcgtcgagcggctcgtcgaactggcgtacacccgcgtcgacatggtcggcaag
cgcggtgagttcgcggtgcgcggcggcatcctcgacgtcttcccgcccaccgccgaccat
ccggtccgcgtcgagttctggggcgacgaggtcaccgaacttcgctgcttctccgtcgcc
gaccagcgttcgatctccgaggtcgacgtgccggtgctcgtcgcgccgccgtgccgcgaa
ctgctgctcaccgacgaggtcaaggcccgcgccgcgcagctcgccgaggacaacccggcc
gatgcggcgctcgtcgagatgctcgacaagatggccggcggcatccccgtcgagggcatg
gaagcgttgctgccggtgctgcagcccggcgagttgcagttgctcaccgacgttctgccc
gccggggctcacgtgctgatctgcgacccggagaaggtccgcacccgtgcgagcgatctc
gcccgcaccgggcaggagttcctcgaggcgtcgtggacggccgcctcgatcggtggtgcg
gcgccgctcgacacctcgaacctcaacggggtggacggccggaagctcgatctcggcgcg
tcggcctaccggtcgctgcgtcaggtgcgcgaggccgcgcaggccgcgggcagaccgtgg
tggacgctcagcccgctcgcctccggtgccgacaccgaactcgtcctcgacgtgcagccg
gcccccgaggtccgcggctccgaggacctgctgtcgatgctgttcgtgaacctgcgcgcc
cacgtcaccgcggggggccgtgcggtgatcgtcgtcgccggtgcgggcaccggacagcgc
atcctcgagcggctgaaggagaacgaggtccccgccgcgaagctcgaaccgggcaccgaa
ccggtgcgcgggcaggtcggcgtcatgcgcggttgcctgcacgagggcgtcgtcctcccc
ggcaacgacgacaacgtggtgccggggctggtggtcgtcaccgaggccgacctcaccggt
aaccgcgtggtcaccgagggccgcaagactcccgtcaagcgtcgcaaccaggtcgacccg
ctcgccctgaacgccggtgacttcgtcgtccacgaccagcacggcatcggcaagttcgtc
gagatggtcgagcgcacggtcggtggtgcccgccgcgagtatctcgtcatcgagtacgcg
cccggcaagcggggccagcccggcgacaagctgttcgtgccgatggagcagctcgaccag
ctctctcggtacgtcggcggtgagctgccgtccgtcagcaagctcggcggatccgactgg
gccaacaccaagcgcaaggcgcgcaaggcggttcgcgagatcgcgggcgagctcgtgcgg
ctgtacgcggcgcggcaggcctcgcccggccatgccttcgcgcccgactcgccgtggcag
aaggagatggaggacgccttccccttcacggagacacaggaccagctcacggtgatctcc
gaggtcaaggccgatatggagaaggcggtgccgatggaccgcgtcgtgatcggcgacgtc
ggctacggcaagaccgagatcgcggtgcgtgcggccttcaaggccgtgcaggacggcaag
caggtcgcggtgctcgtccccacgaccctgctcgcgcagcagcacctgcagaccttcacc
gagcggatggcggccttccccgtgacggtgaaggggctgagccgattcaccgacgtatcc
gattcgcgcgcgatcaccgagggcatggccgacggcaccgtcgacatcgtcgtcggcacc
caccgcctgctccagaccgggatccgctggaaggacctcggtctcgtgatcgtcgacgag
gagcagcgtttcggcgtcgagcacaaggagcacatcaaggcgctgcgcacgcacgtcgac
gtgctcacgatgtcggcaactccgatcccgcgaaccctcgagatgagcatggccgggatc
cgcgagatgtcgaccatcctcaccccgcccgaggaacggcacccgatcctcacctatgtg
ggtgcctacaacgacaagcaggtcgccgcggcgatccgccgggagctgcttcgcgacggc
caggtcttctacgtccacaaccgggtgagctcgatcgacaaggccgccaagcgactccgc
gatctcgtccccgaggcgcgggtcgcggtcgcgcacgggcagatgaacgaggagacgctc
gagaagacggtgcagggcttctggcagcgcgagttcgacgtgctggtgtgcacgacgatc
gtcgagaccggcctcgacatctcgaacgccaacacgctcatcgtcgaacgtgcggattcg
ctcggtctgtcgcagctgcaccaggtgcgcggccgcgtcgggcgttcgcgtgagcgcggc
tacgcgtacttcctgtacccggcggagaagccgctgacggagaccgcctacgaccgactc
gccacgatctcgcagaactccgatctcggcgcgggtatggccgtggccatgaaggacctc
gagattcgcggcgccggtaacgttctcggtgccgaacagtccggccacgtcgccggcgtg
ggcttcgacctgtacgtgcggctcgtcggcgaggccgtcgaggcgtaccgggccgcggcc
gacggccgcacggtcaccaccgacgaagcgcccaaggaggtgcggatcgaccttcccgtc
gacgcgcacatcccggccgactacgtcgcatccgaccggctgcgcctcgaggcgtaccgc
aagctcgccgccgcgaacgacgacgccgcgatcgccacggtcgtcgacgaactcgtcgac
cgttacggtccgctgcccgatgaggtgcagcggctcgtgtccgtcggccggttgcggttg
ctgtgccgcgagtacggcctcgaggaggtcgcggtcaccggcacccagatccggatctcg
ccgatggagctgcccgactcgaagcagatgcggctcaagcggttgtacccgggagcgcag
taccgcgcgacgagcggtctcgtgcagctgccgatcccgcggaccggcggggtgggatcg
gatcgggtgcgcgatgtggcgctgctgcagtacatcgccgacttcctgctcgccctcgac
ggcaagccgcagggctcggtggacctgaacagcgcggcgacggtgaatgcatga
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integrated database retrieval system
