Rhodococcus qingshengii: C1M55_22740
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Entry
C1M55_22740 CDS
T05315
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rqi
Rhodococcus qingshengii
Pathway
rqi03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rqi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C1M55_22740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rqi03400
]
C1M55_22740
Enzymes [BR:
rqi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C1M55_22740
DNA repair and recombination proteins [BR:
rqi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C1M55_22740
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AUS33634
UniProt:
A0AA34YV43
LinkDB
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Position
1:complement(4883968..4886250)
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AA seq
760 aa
AA seq
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MATTDRGQITLDGTTVSVTNLGKILYPESGTTKAEVIDYYTRIAAVMLPHVVGRPGTRKR
WPNGVDGQSFFEKNLASSAPQWLTRASLQHSDRVVTYPVFDSVASLAWLGQQAALELHVP
QWRFDGSERGPATRLVFDLDPGEGVGLTECAEVARSIRDLVATLGWTAYPVTSGSKGIHL
YVPLDRALDGSGASTVAKQIATGLEKLHPDLVTATMARNVRAGKIFVDWSQNNAAKTTIA
PYSMRGRDQPYVAAPRSWDELDDPKLRHLLFDEVLERVESDGDLLGDLDPPVSAAVADTL
THYRNKRSADRTPEPIPAAVTKETAGNTFVIQEHHARRLHYDVRLERDGVLVSWAVPKGV
PTSAGENRLAVHTEDHPLEYATFSGTIPKGEYGGGSMTIWDSGTYETEKWREDEVIVRLS
GKRVQGRFALIRTKGDQWLMHLMKDQNASFGTEFPKNLEPMLATAGTLEGLDSQEWAFEG
KWDGIRVILEYHSGTMSLRSRAGNDKTGDYPALAGLAEVLDGHDVVLDGEVVAYNDAGVT
DFGLLQRGGEPVFLAFDLLYLDGVSLLRKSYSDRRTVLNALAGKVGELEVPPQIEGTAEN
ALEVSTDAGWEGIVAKRRASVYLPGRRGSSWIKVKNWRTQEVVIGGWRTGQGNRAQGIGA
LLMGIPGEDGLTYVGRVGTGFSDRDLESLLATLEPLRQKESPFGEELPADDRKGAVWVKP
ELVGEVRFMDWTATGRLRHPSWRGLREDKKPGDVVRETVQ
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggcaacgacggatcggggtcagatcacgctcgacggcacaacggtgtccgtgaccaat
ctgggcaagatcctctaccccgagagcggcaccacgaaggccgaagtcatcgactactac
acccgtatcgccgcagtcatgcttccgcatgtcgtcggtagaccgggcactcgtaagcgt
tggcccaatggcgtggacggtcagtccttcttcgagaagaaccttgcgtcgtctgccccg
cagtggctcacgcgtgcgtcgctgcaacattctgatcgtgtcgtcacttacccggtcttc
gattccgttgcatccctggcgtggctggggcagcaggccgcactcgaattgcacgttccc
caatggcgattcgacggttccgagcgtggtccggcgacacgactggtattcgatctcgac
ccgggcgaaggcgtcggattgaccgagtgcgccgaggtggcgaggtcgattcgagatctg
gtcgcaactctggggtggactgcctatccggtaaccagtggtagcaagggaattcacctc
tacgttccactggatcgagccttggacggcagcggtgcgtcgactgtcgccaagcagatc
gccaccggactcgagaagcttcacccggatctcgtcaccgcgacgatggctcgaaatgtg
cgggcaggcaagattttcgtggactggagtcagaacaacgcagccaagacaaccattgcg
ccgtactcgatgcgtggtcgcgatcaaccctatgttgccgcgccgcgcagttgggacgaa
ctcgacgatccgaaactacggcatctgttgttcgacgaggttctggagcgcgtcgaatcc
gatggtgatctgctgggcgatctggatccgccggtctcggcggctgtagccgacacgttg
acgcactatcgcaacaagcggtcggccgaccggacgccggagccgatccctgctgcggtg
accaaggagacagcgggcaatacctttgtgattcaggaacatcacgccagacgattgcat
tacgacgttcggctggagcgggatggtgtgctcgtgtcctgggctgttccgaagggcgta
ccgaccagtgccggagagaatcggttggccgtgcacaccgaggatcacccgctcgagtac
gccacgttctcgggcacgattccgaagggggagtacggcggcggttcgatgacgatctgg
gattccgggacgtacgagaccgagaagtggcgtgaagacgaggtgatcgtgcgcctcagt
gggaaacgggtgcagggacgcttcgcgctgatccggacgaagggtgaccagtggttgatg
catctgatgaaggatcagaacgcgagtttcggaacggagtttcccaagaatctcgagccg
atgcttgccaccgctggaacgctcgaaggtctcgactcgcaggagtgggctttcgaaggt
aagtgggacgggattcgagtgattctcgaatatcattcgggcacaatgtcacttcgcagt
cgcgcgggtaacgacaagaccggggactatcccgcccttgccgggttggccgaggtgctg
gacggtcatgacgtggttctcgacggggaagtggtggcgtacaacgacgcgggggtcacc
gatttcggtcttctccagcgaggtggggagccggtgttcctggccttcgatcttctgtac
ctcgacggagtgtctttgctgcggaaatcctactcggaccggcgcaccgtgttgaatgcg
ttggcgggcaaggtcggtgagctcgaggtacctccacagatcgagggcacggcggagaac
gcgttggaggtgagtaccgatgccggatgggaagggattgtcgccaaacgtcgtgcatcg
gtctaccttccggggcggcgtgggtcgagttggatcaaggtgaagaactggcgcactcaa
gaggtggtgatcggagggtggcgcactgggcagggcaatcgagcacaggggatcggggcg
ctgctcatgggaattccgggtgaggatggattgacctacgtggggcgcgtcggtaccggc
ttcagtgatcgcgacttggagtctttacttgcgacactggaaccgctgcgtcagaaggaa
agtccgtttggggaggaactgcccgccgacgaccgcaagggagcagtgtgggtgaaaccg
gaactcgtcggtgaggtgcggttcatggattggacggcgaccggacgccttcgtcatccg
agttggcggggtctgcgggaggacaagaaaccgggcgacgtggtgcgggaaacagtgcaa
tga
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