Rickettsia rickettsii Brazil: RPN_00910
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Entry
RPN_00910 CDS
T01737
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rrb
Rickettsia rickettsii Brazil
Pathway
rrb03030
DNA replication
rrb03410
Base excision repair
rrb03420
Nucleotide excision repair
rrb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RPN_00910 (ligA)
03410 Base excision repair
RPN_00910 (ligA)
03420 Nucleotide excision repair
RPN_00910 (ligA)
03430 Mismatch repair
RPN_00910 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrb03032
]
RPN_00910 (ligA)
03400 DNA repair and recombination proteins [BR:
rrb03400
]
RPN_00910 (ligA)
Enzymes [BR:
rrb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RPN_00910 (ligA)
DNA replication proteins [BR:
rrb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RPN_00910 (ligA)
DNA repair and recombination proteins [BR:
rrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RPN_00910 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RPN_00910 (ligA)
MMR (mismatch excision repair)
DNA ligase
RPN_00910 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RPN_00910 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
AFB21759
LinkDB
All DBs
Position
150343..152412
Genome browser
AA seq
689 aa
AA seq
DB search
MQNIDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHL
ILENSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIFC
EPKIDGVSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKIDNVPEFLEVRGEI
YIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNL
ASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFA
LQNRMGFIARNPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR
ATLHNFQEIARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTETFDTPLFCLSCNSKL
HYTPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDKGLISNPLDIF
FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLA
REFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGEI
LNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAKATAEKLGAKVAVGVSSNTDLVVAGV
DAGSKLKKAKELNIKIIDEEEWLTLIKNV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgatttaatatctgaagaggaagcacaaaaattactagaagaactcgct
gataaaattgcagcgtataaccatgcttattatatagaagataatcctttagtttctgat
agcgagtatgatcagctatttaataccaatctcaagttagaacaaaaatttcctcattta
attttagaaaatagtcctagcaaaaaagtaggggctaaaatagcaaataaatttgctaaa
gttacgcatcaagtgcccatgctatctctcagtaatgcttttgatgagcaagatgtgaga
gattttgtagaccgcataaaaattttcttacgccttaatgagtttgctcctatcttttgt
gaacctaaaatagacggtgtgtctttttctgctgtttataaacacggggtgcttacaacg
ggagctacaagaggtgacggatatgtcggtgaagatataacagcaaatattaaaacaatc
aaaaattttcctcataaaatagataatgttccggagtttttagaagtacgaggggaaatt
tatattgaaaaacaagattttttaaatctaaataaagaacaagaagagcagggcaaggat
aaatttgccaatcctcgtaatgctgctgccggatcacttcgtcagcttgattcttctatt
acggctaaaagaccgctcaaatattttgtatattcaggaggggtaactgaacagaatctc
gcttcttcacaagatcaattacttacaaaattaaaagaatgcggctttaacattaatgaa
atatctaaacttgcgagttctgaagaagaaatttttgccttttacgaatatctcaaaaca
aatagagaaaatttaccttatgaaattgatggagtagtatataagctaaatgattttgca
ctgcaaaatagaatgggctttattgcacgaaatccacgctttgctaccgctcataaattt
cctgcaataataggacaaacaaagttactttctattactgtacaggtcggtagaactggt
acgttaacgccagtagccgaacttgaacccatagaaataggcggggtcactgttagtaga
gcaacattacataatttccaagaaattgcacgaaaagatttgcggattaaggattatgta
ttcctgcaacgtgctggtgacgttattcctaaaatcatgggagttgattttgataaacgt
cctaatgatacagaaacgtttgatactcctttattttgtctgtcatgcaattctaaattg
cattatacgcctgaagatattattatacgctgtgataatggccttaactgccctgctcag
aattatgagcgtatccgtcattttgtatcgaaaaatgctatggatattgaggggcttggg
cgtaagcaagttgagtttttaatagataagggattgattagtaatcctttagatattttc
tttttaaaagaaaaaaatgactctagcttagcaaaacttgaaaatatggatggatggggt
aaaaaatcagtagaaaatctttttaaaaatatagaaaaatcaaaaaacgttagtttgcca
agatttatatatgcattaggcataaggcatatcggtgaacaaaatgctaaattacttgct
agagaatttggcagctataataattttatagctcaaatggaattgcttagaacaaatgag
cctgatatttatcaaaaactaaacaatttagaaggaatcggtgataagattttagtagat
attattgatttttttgatgttaaagaaaatattgagcttatcaaaaaacttggtgaaata
ttaaatattgaagattataaagagactagagaacagagtagtttaacggacaagatagtc
gtatttaccggtagtttaccgacgatatctagagcagaagctaaagcaacggctgagaag
cttggggctaaagttgcagttggcgtatcatcgaacacggatttagttgtagccggcgtt
gatgcaggcagtaaacttaaaaaagctaaagagcttaatattaaaattattgatgaagaa
gaatggcttacacttataaaaaatgtttaa
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