Rickettsia rhipicephali: MCC_05670
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Entry
MCC_05670 CDS
T01786
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
rre
Rickettsia rhipicephali
Pathway
rre03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MCC_05670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rre03400
]
MCC_05670
Enzymes [BR:
rre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MCC_05670
DNA repair and recombination proteins [BR:
rre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MCC_05670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
AFC72643
UniProt:
A0AA86D2N4
LinkDB
All DBs
Position
complement(956756..960121)
Genome browser
AA seq
1121 aa
AA seq
DB search
MLQQKFPAAAKSFFAIDNFTKNPKQDFILSASNEEEALQLYKQALFFSSNENIYYFPSYD
TIPYDHTSPNANILSTRAETLTKLTTNNSNSKLLITHTVNLLNKLPPKDFFSKYFLKLSP
KMKFTTDELAMFLVENSFTRNAISIDAGEFAVRGEIIDIILPGPKAYRIHFSWGYIESIK
EFDIDTQISTKSCRELIISPANEIVLNSETIGNFKNNYLRNFGVNHTDNPLYEAVISGRK
FTGYEQLLPLFYDSCSNLIDYLNDPIFIFDNLSKQAILEFEHSYNNFYSARSEANKLKFN
SFYPTLSPTSLYFTASEITELLERKNNILLTFENSEQASLIENISATSFIEKKTVFDKLF
EVIKANSHKKIIIGSSVLSSCERIKSIIQNYEYKYNEINKLDEAKASIINVGIIPLNQSF
YTKEYLFITASELLEEKPSSTNTNKKLKNILLELDNLAEGEFVVHKDHGIGQFLKLEALE
IKGKPHDFLKILYAGNDKLYIPVESIEVIKKYGNDNAELDKLGSVSWQRSKAKLKNRIKE
IALHLIQIAAKRKLNSSASVEFDLEEYDKFCANFPFSETEDQLTAINDIKEDLRNGMLMD
RLICGDVGFGKTEVAMRAVFMVAKSLNEHLPQVAVVVPTTILCSQHFSRFIERFKGFGLN
IKQLSRVISSKEAKIIRSELESGKINIIIGTHSLLHKNIKFFNLKLLIIDEEQHFGVGQK
ELLKSLKSSSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVMPFDPVIIR
DALLREHFRGGRSFYVVPRIKDIEDIEKQLKQIVPELSYKIAHGKMTPSKIDEVMSEFYV
GKFDILVSTTIIESGIDIAEANTMIIHKADMLGLSQLYQLRGRIGRGKMRGYAYLTVASH
KKMTSHSLRRLEIIQNSCALGSGFTIASHDMDLRGFGNLIGEEQSGQIKEVGTELYQEML
EEQIAILKDAPIVSEQPFIPTINLGLSVFIPDNYVADAALKLGLYRRIGNLSNEIEVETF
KDEMIDRFGLLPIEFNNLLDIVKIKLLCFKLNIENLDSGDNGFVIKFYKNADMTDKILKF
VSTYSNQAKIKPDNKLVYIKKLVDKNIIVEVNQLLWNLSEV
NT seq
3366 nt
NT seq
+upstream
nt +downstream
nt
atgttacaacaaaaattcccggcggctgccaaatctttctttgcaattgataattttact
aagaatcctaagcaagatttcatcttgagtgcgagtaatgaagaggaggcgttgcaatta
tacaagcaagctttatttttttcttctaatgaaaatatttattactttccaagctatgat
accatcccttatgaccatacgtcaccaaatgcaaatatcttatctacacgtgcagaaaca
ttaaccaagctaacaacaaataatagtaatagcaaattactcatcactcatacagtgaac
ttattaaacaaattaccgccgaaagattttttttctaaatattttttgaaattatcccct
aaaatgaaatttactacggatgagcttgctatgtttctagtagaaaatagttttacaaga
aatgcgattagcatcgatgctggggaatttgcggttagaggcgaaatcattgatataata
ttgcccggtcctaaggcttatagaattcattttagctggggttatattgaatcaataaaa
gaatttgatattgatacgcaaatttcgactaaatcctgcagggagcttattattagtcct
gcaaatgagatagttttaaatagtgaaactataggtaattttaagaataattacttacga
aattttggagttaatcatactgataatcctttatatgaggcggtaatatctggaagaaaa
ttcacaggatatgaacaattactcccgttattttacgattcctgctctaacttaatagat
tatttaaacgatcctattttcatattcgataatttgtcaaaacaagccattttagaattt
gaacatagttataacaatttttattcggcaaggtcagaggcaaataaacttaaatttaat
agtttctatcccaccctttcaccgactagcttatattttaccgcttctgaaataacggaa
ttactagaacgaaaaaataatatactacttacttttgaaaactcagagcaagctagctta
attgaaaatatatctgctacaagttttatagaaaagaaaacggttttcgataaattattt
gaggttattaaagcaaattctcataagaaaattattataggctcaagcgttttaagtagt
tgtgagcgaatcaaaagcataattcaaaattatgaatataaatataatgagataaataaa
ttagatgaggctaaggcttcaataataaatgtcgggataattcctttaaatcaaagcttt
tatacgaaagaatatttatttattaccgctagcgaattattagaagaaaaacctagctct
acaaacactaacaaaaaacttaaaaatatcttgctggagcttgataatttagctgaaggc
gaatttgttgtgcacaaagatcatggaatagggcagtttttaaagctagaagctttagaa
atcaaaggcaaaccacatgattttttaaagattttatatgccggcaatgataaattatat
ataccagttgaaagtatagaggtaataaaaaaatacggcaatgataatgcggagcttgat
aagcttggtagcgtttcatggcaaagaagtaaggcaaagcttaaaaatcgtataaaagag
atagcactgcatttaatacaaatagcagctaaaaggaaacttaatagtagtgcttccgtt
gaatttgaccttgaagaatatgataaattttgtgctaattttcctttcagcgaaacggaa
gaccaattaaccgctataaacgatattaaagaagatctaagaaacggtatgttaatggat
aggttaatatgcggtgatgtcgggtttggtaaaacagaggtagcaatgcgtgccgtcttt
atggtagcaaaatctctaaatgaacatttacctcaagtagccgtagttgtaccgacaact
attttatgtagtcaacatttttcaagattcatagaacggttcaaaggttttggtttaaat
atcaagcaattatctagagttattagttctaaagaagcaaaaattataagatcggagctt
gaaagcggtaaaataaatataataataggcactcattctttattacataaaaatataaaa
ttctttaatttgaaattgttaataatcgatgaagaacaacatttcggcgtcggtcaaaaa
gaattgcttaaatcgctaaaatcctcttcccatgtacttgcaatgtcggcaacacctatt
cctcgaacgctgcaaatgtcaatgaccggtttaaaagaacttagcattattgcaacgccg
cctctaaacaggctggaagttcgtacctcggttatgccgtttgatcccgttattatcaga
gatgcattattacgcgaacattttagaggcggaagaagcttttatgtagttccaagaatt
aaagatatagaggatatcgaaaaacaattaaaacaaatcgtgccggaattaagctataaa
atagctcacggaaaaatgactccgagtaaaattgatgaggttatgagcgagttttatgtc
ggtaaattcgatatactagtctcaactactattatagaatcaggaattgatatagccgag
gcaaataccatgatcatacataaggctgatatgctggggcttagtcagctatatcaattg
cgtggtcgaataggtcgaggtaaaatgcggggttatgcctatctaacggtagcaagtcat
aaaaagatgacatctcactccttaagacgcttagagataatacaaaatagttgtgctttg
ggctcaggttttactattgcaagccatgatatggatttacgaggtttcggtaatttgata
ggtgaagaacaatcaggacaaattaaagaagtaggtacagaactctatcaagaaatgctg
gaagaacaaatagctattttaaaagatgcaccgattgtttcagaacaaccctttatcccg
actattaatttgggattatccgtctttattccagataattatgtagccgatgcagctctt
aaacttggactatatagaagaataggtaatttaagtaatgagatagaagtagagacattt
aaagatgagatgattgatagattcggtttactaccgattgaatttaataatttacttgat
attgtaaaaataaaactattatgctttaagttaaatattgaaaatctagattcaggagat
aacggatttgtgattaaattttataaaaatgccgatatgactgataaaattttaaaattc
gttagtacttactctaatcaggcaaaaatcaaaccagataataaattagtatatatcaag
aaattagtagataaaaatataattgttgaggtaaatcaactactttggaatttatcggag
gtgtag
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