Rhizobium ruizarguesonis: J3P73_26340
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Entry
J3P73_26340 CDS
T07270
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
rrg
Rhizobium ruizarguesonis
Pathway
rrg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
rrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
J3P73_26340 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rrg03400
]
J3P73_26340 (ligD)
Enzymes [BR:
rrg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
J3P73_26340 (ligD)
DNA repair and recombination proteins [BR:
rrg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
J3P73_26340 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QSZ03482
LinkDB
All DBs
Position
p1:389038..391683
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AA seq
881 aa
AA seq
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MASDKLSTYRSKRDFQKTAEPSGDTQLAGSNRRRFVIQKHDATRLHYDLRLELDGVFKSW
AVTKGPSLDPHDKRLAVEVEDHPLDYGDFEGTIPKGQYGGGTVMLWDRGYWEPEGNKSPE
QALAKGDFKFTLEGKRLHGSFVLVRMRNDRNGGKRTNWLLIKHHDAFSVENNGEAILEEN
DTSVASGRTMEKIAAGKGRKPKPFMVEDGDVQADAVWDSNRGLAAEERKEDARAGRKSKP
ATTVDLPDFIAPQLCQTLERPPAGTGWIHEIKFDGYRIQLRVLDGEVTLKTRKGLDWTGK
YPEIAEAASGLPDAIIDGEICALDHNGAPDFAALQAALSEGKTGELVYFAFDLLYEGGDD
LRSLPLVERKARLESLLSDAGNDLRIRFVEHFDAGGDAVLRSARKLSLEGIVSKQADAPY
QSGRTESWAKSKCRVGHEVVIGAYAKTSGKFRSLLVGVYRGDHFAYVGRVGTGYGANKVE
ALLPKLRALETTKSPFTGNGAPKKEPEVTWLKPELVAEIEFAGWTADGIVRQAAFKGLRE
DKPAREVRAERPAKPARTDLPQPAAEVTARAVRGKGAKAEVMGVLISNPDKPLWPDANDG
KPVTKEELARYYEAVGSWLIEHIRGRPCSIIRTPDGIGGEQFFQRHAMPGTSNLLELVKV
FGDKKPYLQIDRVEGLAAVAQIGAVELHPWNCEPHKPEVPGRLVFDLDPGPDVPFSAVVS
AAREMRDRLDALGLICFCKTTGGKGLHVVTPLAINKRKPLSWAEAKGFAHDVCQQMARDN
PELYLIKMTKSLRDGRIFLDYLRNDRMATAVAPLSPRARPGATVSMPLTWTQVKSDLDPK
RFTIRTVPALLSKSSAWENYGDGKRPLEQAIKRLGRISKAA
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atggccagtgataaactatcgacctatcggtcgaagcgcgactttcaaaagacggcggag
ccgagcggcgatacgcagctcgccggtagcaatcgccgtcgcttcgtcatccagaaacat
gatgccacccggctgcactacgacctgcggctcgagctcgatggcgtctttaaatcctgg
gctgtcaccaaaggcccatccctcgacccgcacgacaagcggctggcagtcgaggtcgag
gatcacccgctggactatggcgacttcgaaggcaccattccgaaaggtcagtacggcggc
ggcacggtcatgctctgggatcggggctattgggaaccggaaggaaataagagcccggag
caggcgctggcaaaaggcgacttcaagttcaccttggagggcaagcgcctgcacggcagc
ttcgtgctggtgcgcatgcgcaatgatcgcaacggcggcaagcggacaaattggctgctg
atcaaacaccacgatgcgttctctgtcgaaaacaatggtgaagcgatcctggaggagaat
gacacctcggttgcctccggccgtaccatggagaagattgccgccggcaagggccgaaag
cccaagcctttcatggtcgaggacggcgatgttcaggctgatgcggtctgggatagcaac
cgcggactggctgccgaagagcgaaaagaggacgccagagccggccggaaatcgaaaccg
gccaccacggtcgatctgccggatttcattgcgccgcagctctgccagactctggagcgt
ccgcccgccggcacaggttggattcatgagatcaagttcgacggctatcggatccagttg
cgtgtgctggatggcgaggtgacactgaagacgaggaagggactcgactggacgggcaaa
tatcccgagatcgccgaggcggcatcgggactgcccgatgcgatcatcgatggcgagatc
tgcgccctcgaccataacggcgctccggatttcgcagccctgcaggcggctctgtcggaa
ggcaagaccggcgaactcgtctatttcgcatttgatcttctctatgagggaggcgatgat
ttgcgatctttgccgctcgtcgagcgcaaggcgcggcttgaaagccttctgtccgatgcc
ggcaatgatctgcgcatccgtttcgtcgagcatttcgatgccggcggtgatgcagtcctc
cggtctgcccgcaagctctcactggaaggcatcgtctccaaacaggcggatgcaccttat
caatccggccgtaccgaaagctgggcgaagtcgaaatgtcgcgtcggccatgaggtggtg
atcggcgcctatgccaagaccagcgggaaattccgatccctgctggtcggggtctaccgc
ggcgatcacttcgcctatgtcggccgcgtcggcaccggctatggtgcgaacaaggtggag
gccttgcttccgaagctgcgggcgctggagacgaccaagtcgcctttcaccggcaacggc
gcgccgaagaaagagccggaggttacctggctgaagcccgagctcgtggcggaaatcgaa
ttcgcgggctggaccgctgatggcattgtccggcaggcggccttcaagggactgcgggaa
gacaagccggccagggaggtcagggccgaacggccggcaaagcccgcacggactgacctg
ccgcagccggcggcggaggtgacggccagggcggttcgcggaaaaggcgccaaggccgag
gtcatgggcgtgctgatctccaatccggacaagccgctatggccggatgccaatgacggc
aaacccgtcacaaaggaggaactggcccgctactacgaagccgtcggttcctggctgatc
gagcacatcaggggacgtccttgttccatcatccggacgcccgacgggatcggcggcgag
caatttttccagcgccatgcgatgcccggcacctcgaaccttctcgaactggtcaaggtc
tttggcgacaagaagccctatctgcagatcgaccgtgtcgaaggccttgctgccgtcgcg
cagatcggcgccgtcgagctacacccctggaattgcgaaccgcataagcctgaggtgccg
ggccggctcgtcttcgaccttgatccaggtccggacgtgccattctccgcggtcgtttca
gcggcccgggaaatgcgggaccgtctcgacgcgctgggcctgatctgcttttgcaagacg
accggcggcaagggtctacacgttgtcactccgcttgcgatcaataagcgcaagccgctt
tcgtgggcggaagcaaagggctttgcgcatgacgtctgccagcaaatggcgcgcgacaat
cccgagctttatctgatcaagatgacgaagagcctgagggatggccggatcttcctcgac
tacctgcgcaatgaccgcatggccacggcagtagcacctttgtcgccgcgtgcccggccc
ggtgccacggtctcgatgccgctgacctggacacaggtcaaatcggatctggatcccaag
cggttcaccatccgcaccgtcccggcgctgctgtcgaagtcctctgcctgggaaaattac
ggggacggcaaacgaccgctggaacaggcgatcaagcgcctcggcagaatctccaaagcg
gcttga
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